Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02480 ATGGGCAGTGATGCATTGAGAAGCAAAGAGTACTGTGCGCTGAGAGATTTAGAATTCAATTTTAATGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATTTGATGAATTCTACTACATTTCCTGCTATCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGGTCCTTTTCTTGTTATTAACGATAATAAGAGAATCAATGTTTTACCAGTTCTTTACTTACACCAAGAAGCTCCTGTGACTTGCTCCGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATTATATTCGGCTTCAAATTAATGGGGACATTGTAGGAGAAAAGTCACTGTCGGAATCCAATTCAAGGAATTTGAAGGATTTACATTTGGCAAATCGTTGTGGAGACATAAGTGGTGTGCAGGGTTATGTCCACAGTTATGAAGGATTCCATACTGTTTCTTCTATCAAAAATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCGTCTGTCTCTGAGATTGAAGAGGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGCAAAGCATCTTGTCGCAGAAATTTCTCATTAGACGTTGTTTTATCAGATGCATTTGGACAACTTGTAGACAGGGAGGATGAGGTTTTTGCTTCACTTGTGTATGCTGATACGGGGGCTCCAGTGGAGAATACGAGTGAGGACGAAGCACCCCTTTTGTGTAGCTATGATGGAATTGAATTTTCTTCCTTTGAAAGACCCAGCAAGTTTGTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTTTGTTCCAGAATTAGGAAATTATCCTTTCCTTCAGACAAACACCCGTCCAATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACTTTGGTGTGGAAAAAGTCAACCTATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGGTGATGTGTCATTGGAACATGTGAATTCTGGTCATGTAGAAAAAACCAATCCACTGATAAAGCGGTTTAGAGTTGGATTTGACAAGATATCTGTATCAGTTAAGGCCGACCGCCCCACCTTAAAGCAACCTGGTGTCGAATGTAATTCTCATGTATGGCCTGCTAATCAGGTTGATAATGGGTTTCCGACAAGCTCGGATGGGAGATCTCTTAACGTTGAAGAAGCAGATGACGCTCCATCTGAATCATCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAACAGTATGGAATGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAGGATTGGCTGAGAGATCTCAGATGCTTAAAGAAATTGCCACATCTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATAATGTTTCACACTATTCAGGATGTTCCCACCTTGGAAACCAAATATTAATTGCCAAGAGATTGATAGAGGATGGAACTAATCTTTGGTTGGCAATGTCTCCAAGCAATCACCCCGTTCCTTGGGAGAGTGCAGTGTATGAGATTGAAGAACAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTCATCAGGACTTTGAGACTCTAAGAAAGATTGCTGGATGTCAAGAGTATTTAACACAAGAAAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTGTGTAATATCCAGGGACTGGGTAAATCCTATCTGGAATTCCATTTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAAGCAGAAGCTTCACTTCAAGGTCCGACAGGATTTCAAGAACCTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCTGGTAACCTAATTGTTACTTATGTTGGTAGTGACTACAAACTGCGCCACAGACTACTTTCAACAGATCATATATATGGCTCTGATAATCAAAGAATTGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGGTTGGGAAGGATAATGAGAATTTATTAA 2130 0.4061 MGSDALRSKEYCALRDLEFNFNEYDGTFSFCFWIYLMNSTTFPAIILHQIHSDISESGPFLVINDNKRINVLPVLYLHQEAPVTCSGPWTEVPHVTVDFEFPLEKWVHVGCEVCPDYIRLQINGDIVGEKSLSESNSRNLKDLHLANRCGDISGVQGYVHSYEGFHTVSSIKNHHLKDPPLKLSIDESSVSEIEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQLVDREDEVFASLVYADTGAPVENTSEDEAPLLCSYDGIEFSSFERPSKFVLGRASFKLRISQLSSKCDNRLFLIRFFVPELGNYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALQRLNLSQSSAIGDVSLEHVNSGHVEKTNPLIKRFRVGFDKISVSVKADRPTLKQPGVECNSHVWPANQVDNGFPTSSDGRSLNVEEADDAPSESSESIGERNSPSNSMECRRYPISDMTIFKYCLAGLAERSQMLKEIATSASDKEISELAHNVSHYSGCSHLGNQILIAKRLIEDGTNLWLAMSPSNHPVPWESAVYEIEEQFMKIASCGSRSLSHQDFETLRKIAGCQEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGNLIVTYVGSDYKLRHRLLSTDHIYGSDNQRIDVKPLQDMLLAEPELSRLGRIMRIY 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02480 709 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 149 IPR013320 -
Trre16g02480 709 ProSiteProfiles Src homology 2 (SH2) domain profile. 611 709 IPR000980 -
Trre16g02480 709 MobiDBLite consensus disorder prediction 439 453 - -
Trre16g02480 709 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 15 700 IPR001217 GO:0003700|GO:0006355|GO:0007165
Trre16g02480 709 SUPERFAMILY SH2 domain 606 673 IPR036860 -
Trre16g02480 709 MobiDBLite consensus disorder prediction 399 453 - -
Trre16g02480 709 MobiDBLite consensus disorder prediction 407 424 - -
Trre16g02480 709 Gene3D SH2 domain 599 704 IPR036860 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02480 Trre-Chr16 20429432 20439562 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Trre16g02480 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02480 - - cam:101502730 1145.95