Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02479 ATGACTCAGAAAATTCATCTCAATAAGGATTCGAAAGAGTTGGAGTTTTTCACCGAGTATGGGGAAACCAACAGATACAAGATTCTTGAGATAATTGGAAAGGGTAGTTATGGAGTTGTTTGTGCGGCAATTGACACGCACACCGGAGAAAAGGTAGCAATAAAGAAGATTCAGGATGCCTTTGAGCATATCTCTGATGCCGTTAGAATCCTCCGTGAAGTTAAGTTGCTAAGACTTTTACGACACCCTGATATTGTTGATATTAAGAGGATTATGTTGCCTCCTTCAAAGAGAGAGTTTAAAGATATTTATGTCGTCTTTGAGCTCATGGAGTCTGATCTCCATCAAGTCATCAAAGCTAACGATGACTTAACCCGTGATCACCATCAATTTTTTCTTTATCAGATGCTACGTGCGTTAAAGTATATGCATTCGGCTAATGTGTACCACAGAGATCTCAAGCCCAAGAATATATTGGCAAATGCAAACTGCAAACTCAAAATCTGTGATTTTGGACTTGCAAGAGTTGCATTTAATGATGCCCCAACATCGATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCCCCAGAGCTTTGTGGATCATTCTCTTCAAAGTACACACCTGCAATTGATATATGGAGCATTGGATGCATTTTTGCTGAGGTGCTTTTGGGAAAGCCATTGTTTCCTGGTAAAAGTGTCGTGCATCAGTTAGATTTGATTACTGACCTTCTTGGGACACCGTTGCCTGAAACTATTGCAGGAGTTAGAAATGATAATGCAAGGAAGTACTTGTCGAGAATGCGAAAGAAACTTCCTGTGCCATTTGAACAAAAATTCCCAAATGCTGATCCATTGGCACTTCGCCTTTTGCAAAGGCTTTTAACATTTGATCCAAAGGATCGACCGACTGCCGAACAGGCATTAGCTGATCCTTACTTCAAGGGCTTGGCAAAAGTTGAGAGAGAACCTTCATGTAAGCCAATCTCAAAATTGGAATTTGAGTTTGAGAGGAGACGGATAACAAAGGACGATGTTAGAGAGCTAATGTATCGGGAAATACTGGAATATCATCCTCAATTGCTCAAAGATTACATGAATGGAATTGAAGGCGCCAATTTCCTCTATCCTAGTGCAATTGATCAATTAAGAAAGCAGTTTTCTCATCTTGAGGAAAATGATGGTAAAAGTGGACCAGTGCTTCCGATCGAAAGAAAGCATGTCTCGCTTCCACGGTCCACTGTTCACTCTAGTTCAATTCTTCCAAGTTACCAGTCAACCCTTGTTTTGCATGAGAACAAGAAAATGGCAGAAGAGACGCCCAAGGGTTTGGGCACAGTAGTTGAAAATTCTGGATATCAAACAATAGCCATACAACCTCTGCCGCGAGTGCCAGCTAAGCCAGGCAGAGTTGTTGGCCCAGTTCTACACTATGAATATGCGAGAATAATAAAACCTTCTAACGACCCAAGGGTAGTTTACCAAAATACTACTCAAGCAGTCTCGAGTCACGATGTCTTTAGAACCCATCCCCCAAAACATAAGACTACAACAGATATACACAAGGACTTTTCACAAAACAAGAATGAATGCCCATCCCAACAGTCGGACTTACAAGCCAAACCAACCACCTATTTGAACAATTACCCATACTGTCAGCAAAGCAATAACAGTAACCTAAATGAGATTGTAATAGCTTATGATGCCAAATTGATGCGGGCACAATCTCACCTCGGTGTAGTTGATGCAGCAGCAGTAGCGGTTGCAACTCATAGTCACAGCCCCGAATTGGAGGGATGGAGGTTTAGTAACTTTAGATGGGTTTAG 1836 0.4134 MTQKIHLNKDSKELEFFTEYGETNRYKILEIIGKGSYGVVCAAIDTHTGEKVAIKKIQDAFEHISDAVRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTRDHHQFFLYQMLRALKYMHSANVYHRDLKPKNILANANCKLKICDFGLARVAFNDAPTSIFWTDYVATRWYRAPELCGSFSSKYTPAIDIWSIGCIFAEVLLGKPLFPGKSVVHQLDLITDLLGTPLPETIAGVRNDNARKYLSRMRKKLPVPFEQKFPNADPLALRLLQRLLTFDPKDRPTAEQALADPYFKGLAKVEREPSCKPISKLEFEFERRRITKDDVRELMYREILEYHPQLLKDYMNGIEGANFLYPSAIDQLRKQFSHLEENDGKSGPVLPIERKHVSLPRSTVHSSSILPSYQSTLVLHENKKMAEETPKGLGTVVENSGYQTIAIQPLPRVPAKPGRVVGPVLHYEYARIIKPSNDPRVVYQNTTQAVSSHDVFRTHPPKHKTTTDIHKDFSQNKNECPSQQSDLQAKPTTYLNNYPYCQQSNNSNLNEIVIAYDAKLMRAQSHLGVVDAAAVAVATHSHSPELEGWRFSNFRWV 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02479 611 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02479 611 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02479 611 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre16g02479 611 FunFam Mitogen-activated protein kinase 15 119 - -
Trre16g02479 611 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Trre16g02479 611 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Trre16g02479 611 SUPERFAMILY Protein kinase-like (PK-like) 20 321 IPR011009 -
Trre16g02479 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 25 364 - -
Trre16g02479 611 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Trre16g02479 611 CDD STKc_TDY_MAPK 25 362 - -
Trre16g02479 611 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02479 611 FunFam Mitogen-activated protein kinase 112 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02479 Trre-Chr16 20421460 20426155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02479 3 582 MAP Kinase Gene Family AT1G53510 66.443 0.0 771
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre16g02479 Pkinase 1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02479 - - gmx:100800878 905.205