Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02478 ATGGGGATGGAAATTGTGGAACCTAACACATGCATCAGAGGTTGCTGCAGCAGTTCCTCTATTCCTCTTCATCTCCCTCCTTCCTCTTATTCTCTTCTCTCCCCTATTGCCCGAGGTGCTGAGAGTGTTGTTTATGAAGGCACTTTGAATGGTGACAAGGTTGCTGTCAAAAAACCAATTTTGTCACTTTCTCAACACATCAATGATTTCCATAAACAGTTGCAATTGTTGTGCAAGCTAAATCACCCTGGAATAGCAACACTAATTGCTGCCCATGCAAAACCACCTAATTATATGTTTTTCTTCAAGTTATACGAATCTTCCAATCTCGGCCACAAGTTACATGTGGAAGAATGGGCTCCCACTGTCAATGACGCGCTTATGATAACAATGCAGTTAGCAAAAGCCTTGCAATATCTGCATAACCTCGGGATTCTGCACAGAGATGTGAAACCAGAAAATATTCTTCTTGATATCAATCTTTGTCCACACCTCACAGATTTTGGTTTGGCAGAATACAAGAGTGATATTAAGGGAGTTTCTCTTGAGAATTGGAAATCTTCTGGAAAACCTACTGGTGGTTTTCACAAAAAGAACATGGTTGGAACACTTGTTTACATGGCACCTGAAATATTACGAAAGGAGTTACACACAGAAAAGTCAGATGTATATAGTTTTGGGATATCAATCAATGAACTCCTTACTGGTGTTGTGCCATATACTGATCTTCGTGCAGAAGCACAGGCTCACACAGTACTTGAGATGAACTATACCGAGCAACAACTAACAGCAGCTGTTGTTTCTGATGGATTACGACCGGTCCTTGCTAGCGAGGAGTTGGGTATACCATCAAGATTAATATCGATGATACAGAAATGCTGGGATGCTAATCCTAAAAGCAGACCTTCCTTTGATGATATTGTCAAGGAACTTGATTTTATTATGGAACAAAGGAAAGTAATGAAGGTGGAAGATATGCATATTAGAGCTTGTAACTTACCTGTCGACCAAATTGTGGACAAGACTTATCAAGAGAGTATTAGCTGGTCTACTCAAGGTGAACTTTTGGCCAGGAATACCTCTAGTTCAACCGATTCTGGTTTCAGAACATGGTGTGAGTCTTATGTTGAGCTTTTAGCATACCGTCCAACACTGACTTGGGGATCTTATGCTACTTGTGGGAGAAGGGAGACTATGGAGGACACACATTTCATTCTGCCGCATGTTTGTAACGAAAAGGATGTCTATGCTTTTGGTATCTTTGATGGCCACAGAGGCGCAGCAGCTGCTGAGTTTTCTTCTAGAGCTGTACCAGCAATTTTGCAAACTATAGGTTTTACAGGAAGTCCTGCTAATGTGCTAGTGGAAGCATTCCTTAGAACAGATACTGCCTTCAGAAAAGAGCTTGATTCCTATCGCAAATCCAACAGATGTATTCAGAAGGATTGGCATCCTGGTTGTACAGCAATTGCTGCTATTGTAAGTGGGAACAAGCTTTTTGTTGCTAACAGTGGCGATTGTCGGGCAATCTTATGTCGTGCTGGTAATCCCATTGCTCTGAGTACGGATCATGTTGCAAGCTGTCTTCAAGAGAGAGAGCGTGTTATTCGTCACGGAGGTCAAGTACACTGGCAAGTTGATACCTGGAGAGTTGGTCTTCCAGCACTTCAGGTTACTCGTTCAATTGGTGACGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATCACCGAGAGCACCTTATGTGAAGAGGATGAATTTCTGGTGATGGCTAGCGATGGTCTGTGGGATGTGATGAGCAGTTTGGATGTGATAAATATAATAAAAGACACTGTTAAAGAGGCTGGCATGTGCTCTAAGAGGTTGGCTACTGAAGCTGGGGAACGCGGCAGCAAAGATAACATTACAGTTATTGTCGTTTTTTTACGACCTGTATCTACAGCAGAGAGAATTTATTAG 1962 0.422 MGMEIVEPNTCIRGCCSSSSIPLHLPPSSYSLLSPIARGAESVVYEGTLNGDKVAVKKPILSLSQHINDFHKQLQLLCKLNHPGIATLIAAHAKPPNYMFFFKLYESSNLGHKLHVEEWAPTVNDALMITMQLAKALQYLHNLGILHRDVKPENILLDINLCPHLTDFGLAEYKSDIKGVSLENWKSSGKPTGGFHKKNMVGTLVYMAPEILRKELHTEKSDVYSFGISINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDGLRPVLASEELGIPSRLISMIQKCWDANPKSRPSFDDIVKELDFIMEQRKVMKVEDMHIRACNLPVDQIVDKTYQESISWSTQGELLARNTSSSTDSGFRTWCESYVELLAYRPTLTWGSYATCGRRETMEDTHFILPHVCNEKDVYAFGIFDGHRGAAAAEFSSRAVPAILQTIGFTGSPANVLVEAFLRTDTAFRKELDSYRKSNRCIQKDWHPGCTAIAAIVSGNKLFVANSGDCRAILCRAGNPIALSTDHVASCLQERERVIRHGGQVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITESTLCEEDEFLVMASDGLWDVMSSLDVINIIKDTVKEAGMCSKRLATEAGERGSKDNITVIVVFLRPVSTAERIY 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02478 653 SUPERFAMILY Protein kinase-like (PK-like) 17 320 IPR011009 -
Trre16g02478 653 FunFam Protein kinase and PP2C-like domain-containing protein 20 345 - -
Trre16g02478 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Trre16g02478 653 SMART serkin_6 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02478 653 SMART PP2C_4 376 641 IPR001932 -
Trre16g02478 653 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02478 653 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 314 - -
Trre16g02478 653 Gene3D Transferase(Phosphotransferase) domain 1 19 340 - -
Trre16g02478 653 Gene3D - 376 648 IPR036457 -
Trre16g02478 653 ProSiteProfiles PPM-type phosphatase domain profile. 386 643 IPR001932 -
Trre16g02478 653 Pfam Protein phosphatase 2C 391 636 IPR001932 -
Trre16g02478 653 Pfam Protein kinase domain 31 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02478 653 SUPERFAMILY PP2C-like 374 645 IPR036457 -
Trre16g02478 653 CDD PP2Cc 388 643 IPR001932 -
Trre16g02478 653 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 377 647 - -
Trre16g02478 653 SMART PP2C_SIG_2 401 643 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02478 Trre-Chr16 20412695 20419949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02478 99 653 PP2C-type Phosphatase Gene Family AT2G40860 63.458 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Trre16g02478 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02478 - - gmx:100785390 1092.03