Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02462 ATGGATCCTACCAAAAAGCGCAAGCTTGACGAGAACGGCTTCGGTGGAGAAGCTGATCACCTAAAGCTCTCCCCGTCGGAAGCTCGCAAGGTCATCGAGAGGTTCACCCCTGACCAGCTAATCAACATCCTCCAAGACGCCATCATCCGCCATCCTGACGTTCTCTCCGCCGCTCGTGCAATTGCAGACACTGACATCTCCCAACGCAAACTCTTCATCCGCGGCCTTGGTTGGGACACCACTACTGAAGGTCTCCGTTCACTTTTTTCAACCTACGGCGAACTTGAAGAAGCCATCGTCATCCTCGACAAGGTGACCGGGAAGTCAAAGGGTTACGGCTTTGTCACCTTCCGCCATGTCGACGGAGCTCTACTCGCACTTCGTGAACCTAGCAAGCGCATCGACGGGCGCGTAACTGTCACGCAGCTGGCCGCAGCAGGGAATTCTGGCTCGAACACCAACGCAGCTGACATTGCGCTCCGCAAAATATATGTATCGAACGTGCCGCCGGATCTAGCAGGAGATAAGCTTCTAGCTCATTTCTCAATTTATGGGGAGATTGAGGAGGGTCCATTGGGCTTTGATAAACAGACAGGAAGGTCAAAAGGGTTTGCTCTTTTCGTCTATAAGACACCGGAGGGGGCACAGGCTGCACTATTGGAGCCAGTTAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGGGGAAACAGCAAGGGATTCGTGGTGGACCGGAAGGGGTTCAAGGTCGTGGGAATGCTCATGGAAACGGCATGGGAGTGGCTTCTGCACCTGGGCCTGGGGCGGGTCAGTACAGTGGTTCTGTTGGTATTGGTTCTTATGGAGGGTTTTCTGGTGGACATCAGGGCCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGGTGGTTTGTCTTCTGTGGGGAATCAGGCTCCGTCTTCAATGGGTGGTACTGGAGGATATGGTGGTGGTCATTATGGAGGTTATGGCGGGCCTGCTGCAACAGGTTTTGGCGGTAGTGGTGGCGGCGGTGGTTATGGAGGAGGAGGTAGTGGTGTGACAGGTGCTGGTGCGGGTACTGGTGGTGGACTTGGCTCTGCTGGAGCATCCTCCTCCTGCTGTAGCGTCACCTGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGTGCCCCCTTACTACTAAGGTGTATCATCGCTTGTTGGGCGCAGATCTTTGTGTGCTTCTGGTGA 1257 0.5402 MDPTKKRKLDENGFGGEADHLKLSPSEARKVIERFTPDQLINILQDAIIRHPDVLSAARAIADTDISQRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGIRGGPEGVQGRGNAHGNGMGVASAPGPGAGQYSGSVGIGSYGGFSGGHQGQPPMGNHPLNSSVGGGLSSVGNQAPSSMGGTGGYGGGHYGGYGGPAATGFGGSGGGGGYGGGGSGVTGAGAGTGGGLGSAGASSSCCSVTCTKGSTWFHVSKCAPLLLRCIIACWAQIFVCFW 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02462 418 Gene3D - 154 277 IPR012677 -
Trre16g02462 418 PANTHER GEO13361P1-RELATED 52 349 - -
Trre16g02462 418 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Trre16g02462 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Trre16g02462 418 SUPERFAMILY RNA-binding domain, RBD 61 146 IPR035979 GO:0003676
Trre16g02462 418 MobiDBLite consensus disorder prediction 288 321 - -
Trre16g02462 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 229 IPR000504 GO:0003723
Trre16g02462 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Trre16g02462 418 SUPERFAMILY RNA-binding domain, RBD 152 263 IPR035979 GO:0003676
Trre16g02462 418 Gene3D - 51 153 IPR012677 -
Trre16g02462 418 MobiDBLite consensus disorder prediction 242 272 - -
Trre16g02462 418 SMART rrm1_1 70 142 IPR000504 GO:0003723
Trre16g02462 418 SMART rrm1_1 162 234 IPR000504 GO:0003723
Trre16g02462 418 MobiDBLite consensus disorder prediction 299 321 - -
Trre16g02462 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02462 Trre-Chr16 20296858 20299214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02462 157 242 C2H2 Transcription Factor Family AT2G19380 41.860 2.34e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02462 K12741 - gmx:100776220 440.269