Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02458 ATGCAAAAACGTATGCAAACAACACTGGAAGAAGATAAACACAATAAGGGTCTGAGTCTGGATCCTCCCAGAACAAATCACCATCATCATCATCCTCTTTATCACCATCCTCAACAACAAGACCCTCACCACCATAATAATGATGAAGATGAAAATGATGAACACAACTCTTCTCCTTCTTCTGGAAACCCCAATCCTCACTTTCATCACCAAAATTCTTCTACCTTTCATTTTCATCACCACCCATATTTCCAACAGCATATAGATTTAGAGTCGGAACAAGAGCCACTTCATCAACCAAAGAAATGGTCTTCTTTCCTTCCACCACCACACCCTAATCAACCACCACCACCACCAACAACATCATCGTTTTATTCCATCGAATATGCAAGAAAGATGGGAGAAACAACACACGAACACCACCACCACACAGGAGCAGAAACAACAACAGCAACAGCAGCACCAGCAGCAACAAAACCAGCAGCAACCTCGTCTAAGAGAATTGCAGGAGAAATCGTTGAAGTGCAAGGAGGTCACATTGTACGGTCAACAGGACGGAAAGACCGTCACAGTAAAGTATGCACGGCGAAAGGTCCACGTGACCGCCGTGTACGACTCTCGGCCCACACCGCGATCCAATTCTACGACGTGCAAGATCGTTTGGGCTATGACCGGCCTAGTAAAGCAGTCGATTGGCTTATCAAAAAAGCTAAATCCGCCATCGACGAACTCGCTCAGCTTCCGGCATGGAACCCCACCGCCACATGTTCTACAACACCACCGCAACAACAACAGCAGCAGCAGCAACAACAACAGCAACAAACAAACGAAATGTTCAACCGGCAATCTCCGGTTGACAACCATCCAGTAACCGCTTCCACCAGTCACCGCTCAGCGGCGGCATTAGAGCGAAGAATGCCACCACAGCAACAAGAACAATTTTCTTCGCAGCAACTAGAGTTAGACTATAACAATAGTAGCAGCGGGAAACATGGTTTTCTTCAAGGCTCATTGGATACTGACATTGCTGATACTATAAAATCTTTTTTTCCAGTTGAAACGCAGACGACTTCGTTTCACAGTTACCCACAGCCGCCGGATTTGCTTTCTCGAACGCCGGCAGCAACTGCCCAGCAGCAAGATCTCCGCCTCTCATTGCAATCTTTTCAAGATCCTATTCTGCTTCAGAGCCACCATGACAACCACCAACATCACCACCACCACAACCAAGTGCTTTTTGCCGGAAACTCCTCGCTCGGCGGCTACGATGGTGGTGGTGGAAGTGGAACCACCTTATGGTCTGAGCAGCAGCAGCACCAGCAGCAACAAGAGGAAAATGACAATGATGGTGGTAACAGTGGCCATGGTGCGGGATTTGTGTTCAATGCACCTGCTGCTCCCGTGTTCGGCGGTTATGGCCAGTTTTTTACTCAGAGGGGACCCCTTCAGTCCAGTTACAATCCTTCAGTTCGTGCTTGGATAGATCCTTCCATGGCGGCGACGGCTAATCTAGCCGATCACCATCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGTCTCTGGTGGTGGATTCTCCGGCTTTCGTATACCAGCACGAATTCAGGGTGAAGAGGAACATGACGGCGTATCTGATAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1674 0.4827 MQKRMQTTLEEDKHNKGLSLDPPRTNHHHHHPLYHHPQQQDPHHHNNDEDENDEHNSSPSSGNPNPHFHHQNSSTFHFHHHPYFQQHIDLESEQEPLHQPKKWSSFLPPPHPNQPPPPPTTSSFYSIEYARKMGETTHEHHHHTGAETTTATAAPAATKPAATSSKRIAGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSTTPPQQQQQQQQQQQQQTNEMFNRQSPVDNHPVTASTSHRSAAALERRMPPQQQEQFSSQQLELDYNNSSSGKHGFLQGSLDTDIADTIKSFFPVETQTTSFHSYPQPPDLLSRTPAATAQQQDLRLSLQSFQDPILLQSHHDNHQHHHHHNQVLFAGNSSLGGYDGGGGSGTTLWSEQQQHQQQQEENDNDGGNSGHGAGFVFNAPAAPVFGGYGQFFTQRGPLQSSYNPSVRAWIDPSMAATANLADHHHHYLSPMIHQASVSGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02458 557 MobiDBLite consensus disorder prediction 414 459 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 57 75 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 95 124 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 251 298 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 136 164 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 534 557 - -
Trre16g02458 557 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 146 483 IPR005333 GO:0003700
Trre16g02458 557 MobiDBLite consensus disorder prediction 251 328 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 35 56 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 429 450 - -
Trre16g02458 557 Pfam TCP family transcription factor 185 298 IPR017887 -
Trre16g02458 557 MobiDBLite consensus disorder prediction 1 75 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 103 122 - -
Trre16g02458 557 MobiDBLite consensus disorder prediction 308 328 - -
Trre16g02458 557 ProSiteProfiles TCP domain profile. 186 244 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02458 Trre-Chr16 20251348 20254191 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02458 169 557 TCP Transcription Factor Family AT3G15030 46.313 5.73e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre16g02458 TCP 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02458 - - mtr:25502512 582.793