Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02455 ATGGAGTACATACCTCTCTTGTTTGTTCTCTTCACTGCTCTTCTAGTCTCAACTCCTCAAGCCTTTAAATTGGACGTTGGTGGAACTGATGGTTGGACTCTAAACCCTTCTGAGAATTACAACAGCTGGTCTGGAAGGAACAGGTTCCAAATCAATGACGTTATAGTTTTCAAATACAAGAAGGGTTCAGACTCAGTGTTGGAAGTAAAGAAAGAAGATTATGAAAAGTGCAACAAAACAAACCCAATCAAGAAATTTGAAGATGGTGAAACAGAGTTCACTTTGGATAGATCAGGACCATTCTATTTCATCAGTGGAAAAGATGAAAATTGTGAAAAGGGTCAGAAATTAACACTTGTTGTTATATCCCCACGTAAAAACACATCACCCTCTGTTTCTACTCCATCATCACCACCATCACCCTCTGTACCTGCTGGTGGACCTACAGCTTCACCTCCATCTCCAGTGACCACACCTCCGGCCAGTGGACCTAAGGCATCAACTCCTTCTCCGGTGAGTACACCTCCAGCTGGTGTACCTACGGCTTCATCTCCATCTTCAGTGAGCACACCTCCAGCCGGTGGACCTACTGCTTCATCTCCATCTCCATCTCCATTTTCAGTCAGTACACCTCCAGCCGGTGGACCTACTGCTTCATCTCCATCTCCATCTCCATTTTCAGTCAGTACACCTCCGGCCGGTGGACCTATAGCTTCCTCTCCTACTAGTGCTCCCACGGCCGGTGGACCATCAGGGTCTCTTGCACCAGGACCATCAAGCAGTGGCTCATATGTCCGTCCTTCGAGCTTTGTGGTGTGTTCCATTACTGTTGTTGTTGGTGCTCTGTTTTTGAGTTATTGA 861 0.4646 MEYIPLLFVLFTALLVSTPQAFKLDVGGTDGWTLNPSENYNSWSGRNRFQINDVIVFKYKKGSDSVLEVKKEDYEKCNKTNPIKKFEDGETEFTLDRSGPFYFISGKDENCEKGQKLTLVVISPRKNTSPSVSTPSSPPSPSVPAGGPTASPPSPVTTPPASGPKASTPSPVSTPPAGVPTASSPSSVSTPPAGGPTASSPSPSPFSVSTPPAGGPTASSPSPSPFSVSTPPAGGPIASSPTSAPTAGGPSGSLAPGPSSSGSYVRPSSFVVCSITVVVGALFLSY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02455 286 Gene3D - 21 125 IPR008972 -
Trre16g02455 286 Pfam Plastocyanin-like domain 32 115 IPR003245 GO:0009055
Trre16g02455 286 ProSiteProfiles Phytocyanin domain profile. 22 123 IPR003245 GO:0009055
Trre16g02455 286 PANTHER BLUE COPPER PROTEIN 23 158 IPR039391 GO:0009055
Trre16g02455 286 FunFam Early nodulin-like protein 1 21 126 - -
Trre16g02455 286 MobiDBLite consensus disorder prediction 179 204 - -
Trre16g02455 286 MobiDBLite consensus disorder prediction 233 264 - -
Trre16g02455 286 CDD OsENODL1_like 22 122 IPR041846 -
Trre16g02455 286 SUPERFAMILY Cupredoxins 21 122 IPR008972 -
Trre16g02455 286 MobiDBLite consensus disorder prediction 124 264 - -
Trre16g02455 286 MobiDBLite consensus disorder prediction 134 178 - -
Trre16g02455 286 PRINTS Proline rich extensin signature 148 169 - -
Trre16g02455 286 PRINTS Proline rich extensin signature 188 205 - -
Trre16g02455 286 PRINTS Proline rich extensin signature 132 144 - -
Trre16g02455 286 PRINTS Proline rich extensin signature 169 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02455 Trre-Chr16 20227959 20229409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02455 1 197 Phytocyanin Superfamily AT5G53870 46.569 1.78e-52 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02455 - - cam:101497669 208.379