Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02453 ATGGCTGAAGCTCCGGCTCAATTGAATGAACAAAATGATGATCCCCGCATTGGTAAAGAAGTGGTTGTCGCACCCGTTGATGAACCAACCGGTATTTCTATTAACACAGGGAATCTATTTTTAAATGCTGCATTGTATAATGATAGGGATGAGCTGATTGATTGGTGTAGACAAGTAGCCTTAAATGCTGGATTTAGTATGGTGATAGAGAAATCTGATAAGGGTAACGGAGATAGACGGAAACCGTTTTTTATTTTGGGTTGCGAAAGAGGTGGAGTTTACAAGGAACCAAAGAGGAAATTAAAGAGAGACGACACGGCTACAAGGAAATGTGACTGTCCGTTTAGGTTGCGGGTTTACTTTCTTGCAACCAAGAAATGGAAACTAAGTGTCGTGAATGGTGAACATAACCATGAAATGGCGAAAAATTTGGAAGGCCATATTCTCGCCGGACGGTTAAAACCGGAAGAAAAGGAGTGTGTTCACCAGATGACAAGGAACTTGGTTGCTCCAAAAACCATTTTGAACACGTTGAGGGAGAAGAATAAAGATAGTAAGATAAATATGAAACAAATTTACAACGAGCGTCAACGGTACAAACGTGATCTTAGGGGTGAAATGACTGAAATTCAACAACTCTTGAAGTGTCTTGAATCTCACAGATACTTCCACAAGTTTCGAACTAATGGTGAGTCTACAACTTTACAAGATATTTTCTTCGCACATCCTGATAGTGTTAAATTGTTTAACACTTTTCCTACCGTACTGTTGATGGATTCGACGTACAAGACCAACAAGTATAAAATGCCTCTGTTTGAGATAGTTGGTGTAACGTCGACACAAGTTACTTTCAATGTTGCCTATGCATTTCTCACAAATGAAAGAGAAGACAATTTTAAATGGCCCTTGAGGCATGTCGGAGTCTCTTGA 930 0.3968 MAEAPAQLNEQNDDPRIGKEVVVAPVDEPTGISINTGNLFLNAALYNDRDELIDWCRQVALNAGFSMVIEKSDKGNGDRRKPFFILGCERGGVYKEPKRKLKRDDTATRKCDCPFRLRVYFLATKKWKLSVVNGEHNHEMAKNLEGHILAGRLKPEEKECVHQMTRNLVAPKTILNTLREKNKDSKINMKQIYNERQRYKRDLRGEMTEIQQLLKCLESHRYFHKFRTNGESTTLQDIFFAHPDSVKLFNTFPTVLLMDSTYKTNKYKMPLFEIVGVTSTQVTFNVAYAFLTNEREDNFKWPLRHVGVS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02453 309 Coils Coil 175 195 - -
Trre16g02453 309 Coils Coil 200 220 - -
Trre16g02453 309 Pfam FAR1 DNA-binding domain 59 141 IPR004330 -
Trre16g02453 309 PANTHER SWIM-TYPE DOMAIN-CONTAINING PROTEIN 100 303 - -
Trre16g02453 309 Pfam MULE transposase domain 255 304 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02453 Trre-Chr16 20218948 20219877 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre16g02453 FAR1 1.6e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02453 - - tpra:123891890 400.208