Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02452 ATGGAAGCTAGGAGTATTGAGAGGAGGAGAACATTGATGATGGAAAAGGTGAGAAGAAACAACACAGTGGAAGAAGAAGTGGAAAATGAAGTAGAAGAAGAAGATGGTGATTTTAGTCTGACTGAAGAAGAGAAGAAGAAAGGGTCCGGTGGCGGAAGAAGAGGTGGTGGTGGTGGTGTTTCTCCACCTTCCTGCCAAGCAGAAAGGTGTGGAGCTGATTTAACTGATGCAAAGAGATACCATCGTCGCCATAAGGTGTGTGAGTTTCATTCTAAGGCACCTGTTGTGGTGGTTTCAGGGCTGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACCTAGCAGAGTTCGATGAATCTAAAAGAAGCTGTCGCAGGCGGTTGGCTGGACACAATGAAAGGCGCCGGAAAACTAACCCGGAAACTGCTAATGAGGGCAGCAGCCACAGCAAAGGACAACAACATCAACCTAAGGAAACACAGTGCAGAATTCAGATGAACTTACCAGGGAGTTCTGGCTACAAGTCATTCAATATTAGGTGA 546 0.4652 MEARSIERRRTLMMEKVRRNNTVEEEVENEVEEEDGDFSLTEEEKKKGSGGGRRGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVSGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPETANEGSSHSKGQQHQPKETQCRIQMNLPGSSGYKSFNIR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02452 181 MobiDBLite consensus disorder prediction 17 68 - -
Trre16g02452 181 SUPERFAMILY SBT domain 63 143 IPR036893 GO:0003677|GO:0005634
Trre16g02452 181 Coils Coil 13 34 - -
Trre16g02452 181 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Trre16g02452 181 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Trre16g02452 181 MobiDBLite consensus disorder prediction 144 181 - -
Trre16g02452 181 Pfam SBP domain 65 138 IPR004333 GO:0003677
Trre16g02452 181 MobiDBLite consensus disorder prediction 129 181 - -
Trre16g02452 181 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 157 IPR044817 GO:0003677
Trre16g02452 181 FunFam Squamosa promoter-binding-like protein 14 57 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02452 Trre-Chr16 20211086 20212226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02452 9 181 SBP-box Gene Family AT3G15270 48.315 1.96e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre16g02452 SBP 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02452 - - aprc:113864686 251.521