Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02451 ATGACAGGCAAAGAAATCCTTCATAAGATGAAGGAAAAAGTTTTGGGACCATCTGATCCAGACTCAGGGAAAGGAAAGAGCAAAATGTCAAAGCATGTAACTCATGGCTTTCACTTGGTAAAGGGAAAATCAAACCATGCCATGGAAGACTACATAGTTGCTGAATTCAAGCATGTTGATGACAACGAGTTGGGTTTATATGCGATATTTGATGGTCACTCAGGTCATAATGTAGCTGATTACTTGCGGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGATTTCTGGACTGAACCTGCGGAGAGTGTGAAGAGAGCATATAGTGAAACTGATTCTACTATTTTAGAGAAATCAGATGATTTGGGTAGAGGAGGTTCAACTGCAGTTACAGCAATACTCATTAATTGTCAAAAGCTAGTAGTGGCCAATATTGGAGATTCACGGGCTGTCTTATCCGAGAATGGCGTTGCTATACCACTGTCAGTGGATCATGAACCAACAATAGAAAGCGATGATATAAAAAACAGAGGTGGTTTTGTATCAACCTTCCCAGGGGATGTTCCACGGGTTGATGGACAATTAGCAGTGTCAAGGGCATTTGGCGATAAAAGCCTAAAGGTACACATGACCTCAGAACCACATGTGACAGTGAAGGTGATAGATGATGGTGGAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGGTTATGTCAAATCAAGAAGCAGTTGATGCTATCAAAGATATTAAGGATGCTCGGTCAGCAGCAAAGCGTCTTACTGAAGAAGCGCTCAACAGGAATAGCTCAGATGATATCTCTTGCATTGTTGTGAGGTTTCACTGA 849 0.4099 MTGKEILHKMKEKVLGPSDPDSGKGKSKMSKHVTHGFHLVKGKSNHAMEDYIVAEFKHVDDNELGLYAIFDGHSGHNVADYLRSHLFDNILKEPDFWTEPAESVKRAYSETDSTILEKSDDLGRGGSTAVTAILINCQKLVVANIGDSRAVLSENGVAIPLSVDHEPTIESDDIKNRGGFVSTFPGDVPRVDGQLAVSRAFGDKSLKVHMTSEPHVTVKVIDDGGEFVILASDGLWKVMSNQEAVDAIKDIKDARSAAKRLTEEALNRNSSDDISCIVVRFH 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02451 282 SMART PP2C_4 30 279 IPR001932 -
Trre16g02451 282 FunFam Probable protein phosphatase 2C 39 24 282 - -
Trre16g02451 282 CDD PP2Cc 41 281 IPR001932 -
Trre16g02451 282 MobiDBLite consensus disorder prediction 8 30 - -
Trre16g02451 282 PANTHER PROTEIN PHOSPHATASE 29 281 IPR015655 GO:0004722|GO:0006470
Trre16g02451 282 SUPERFAMILY PP2C-like 30 282 IPR036457 -
Trre16g02451 282 Gene3D - 18 282 IPR036457 -
Trre16g02451 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Trre16g02451 282 Coils Coil 244 264 - -
Trre16g02451 282 MobiDBLite consensus disorder prediction 8 28 - -
Trre16g02451 282 Pfam Protein phosphatase 2C 45 274 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02451 Trre-Chr16 20205930 20209796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02451 1 282 PP2C-type Phosphatase Gene Family AT3G15260 73.702 4.05e-159 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02451 K17506 - gmx:100787942 478.404