Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02441 ATGGCATTGGGTTCAACTTTCGTTTCCTTGCCAATATTTTTATTCATTTGTCTCAATTTGTTTTACGTGAACGCAACATCCTACAAAGAGTTGCTACTAATGGGGCAATCAGTAAGAAGTTCAGACACATTTCTTTCAAAAGGTGGAAACTACGAACTGGGATTTTTTACCAGAAAGAGAGAGAACTCGACCAAGTATTACGTGGGTATATGGTCTAAAAAGGTACCACATGACAAGATTGTTTGGGTTGCCAACAGAGATTACTCTTTACAAACATCATCAGCGTTTCTTACCATTCAACCTGATGATGGTAATATTGTCATTATAGATGGAGCAGTGACATACCACGTTAGTCGCGTTGCAAAAAAAAACTTTAGTACCTATGTAACACTGTTCGAGACAGGAAACTTGGTATTGGTGAGTAACTCTAACCAAGAGATTTTATGGCAGAGTTTTAATTACCCCACGGATACCCTTTTACCCGGAATGAACATAGGACACGATAATGACACGGGATACACTTGGTCATTGAGATCATGGACAAGTGTAGACGACCCTTCTCCGGGTCCATATACACTCCAATATAATTCTGGCTTTGCGAGTTTAACGGTGAACAAAGGTTCTAATGTGTTGTGGGTTGATGGTAATTCCAATTTATCTATTCAGGTCGTTTTCAACCGAGTGGATTTGGAACAGAACTATGCTACTAGTGACTATTTCACTCTTCCAATTCATAGCAATTCAAGGTTGATATTGGATGTGTCTGGGGATCTTAAATACCAAGGTTGGTCAAAAGAATCTAAGCTTTGGTCCTCTCTTCAGTCATCCAAGTGCAGAACAAACAATTCTTGTGGAAAATTTTCCATTTGTAATCCGCAAGATCGTGACCCTTGTCAGTGCCTTGATGGCTTTACACCGTTTGATGCTGATTCTTGGAAACAGGGGAACAGGTCAGCTGGATGTGTCAGATTTAAGGAGTTGTCCTGCAGCAACAATAACAGCAGTAAAGATGGATTTTCAAGGTTCAGTTCAGTGGAATTACCTCCAAATGATGCAAGCCTACTGCTGGATTCTGTAGCACAATGTAACAACATTTGCTTCACCAATGGTTCTTGTGTTGCTTTTGCTTATGATTTTAATGGTAACTGCATGCAGTGGAATGATCAAGTACCAACTCTCAAGAACATCTCAAGTGATAGTCAAGATGGTGATAAAAATAAGCTAAATTTTTATCTCAGACTTGGTGCTTCAGACGTGCTTACCACCATTGGAGGACATGCAAATAGGAAGAGGAATCTACTTGTAATTGTTATTTTGATCTCATTTTTAATATTGCTTATACTGCTTGGCTTATTTGTTTACTGGACTAGAAAGCAAAGGAGGAAAGGGGATGATTTGCTAAATTTTGAAGTAGGCATGACCATGGAAGTTAAAGACACAGAGTCAGACTTTACTAGAGCAGACAAGGGTGCAAAGATTAAGAGGAAGGAAGTCAAGTTGCCATTATTTAGTTTCGTGAGCGTTTCAGCAGCAACTAATAACTTTTCAGATGCAAATAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTATAAGGGTACATTATTGAATGGGGGTGAGGTCGCTGTAAAAAGGCTATCTCAGAGATCAGGTCAAGGATGGGAGGAGTTGCGAAATGAAGCATTGTTGATTGCAAAACTCCAACATAATAATCTTGTTAGACTACTCGGCTGCTGCATTGAGCGAGATGAAAAAATGCTTATTTATGAATTCGTGCCCAATAAAAGCTTGGATTGTTTTCTCTTTGATGCAGAAAAAAGAGGGATGCTGGATTGGGGAACACGGGTTAGAATAATTGAAGGGATTGCCCAAGGGATCCTTTATCTGCATCAACATTCTAGGTTTCGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCGAGAATATTTGGTGAGAATGTTCTTCAAGCAAATACAAACCGGATAGTTGGAACTTACGGCTACATGTCTCCTGAATATGCTATGGAAGGCATTTTCTCAATTAAATCTGACGTGTTTAGCTTTGGAGTCCTTTTGTTAGAGATTATAAGTGGAAAGAAAAATACTGGTTTTTATCAAACAAATTCCTTCGATCTTCTTGGATATGCCTGGGATCTATGGACCAACGATTCCGGAATAGATCTGATTGGTTCAGAATCGGATGATATCTCCAGCAAGCATTTAGTACCAAGATACGTGAATATAGGACTTCTTTGTGTTCAGCAAAGTCCAGAAGATAGGCCAACCATGTCTGATGTTGTAACAATGATTGGCAATGACACTACATCCCTTCCTAGTCCAAAGCCACCAGCATTTCAAAATATGAGAGGTATTGAAAGTTCAAGACTCTCTAGAACCACAGAAGAAAACTTTTCTGTGAATGTTGTCACAAATTCAGTAGTTGAAGCAAGATGA 2499 0.3914 MALGSTFVSLPIFLFICLNLFYVNATSYKELLLMGQSVRSSDTFLSKGGNYELGFFTRKRENSTKYYVGIWSKKVPHDKIVWVANRDYSLQTSSAFLTIQPDDGNIVIIDGAVTYHVSRVAKKNFSTYVTLFETGNLVLVSNSNQEILWQSFNYPTDTLLPGMNIGHDNDTGYTWSLRSWTSVDDPSPGPYTLQYNSGFASLTVNKGSNVLWVDGNSNLSIQVVFNRVDLEQNYATSDYFTLPIHSNSRLILDVSGDLKYQGWSKESKLWSSLQSSKCRTNNSCGKFSICNPQDRDPCQCLDGFTPFDADSWKQGNRSAGCVRFKELSCSNNNSSKDGFSRFSSVELPPNDASLLLDSVAQCNNICFTNGSCVAFAYDFNGNCMQWNDQVPTLKNISSDSQDGDKNKLNFYLRLGASDVLTTIGGHANRKRNLLVIVILISFLILLILLGLFVYWTRKQRRKGDDLLNFEVGMTMEVKDTESDFTRADKGAKIKRKEVKLPLFSFVSVSAATNNFSDANKLGEGGFGPVYKGTLLNGGEVAVKRLSQRSGQGWEELRNEALLIAKLQHNNLVRLLGCCIERDEKMLIYEFVPNKSLDCFLFDAEKRGMLDWGTRVRIIEGIAQGILYLHQHSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGENVLQANTNRIVGTYGYMSPEYAMEGIFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSFDLLGYAWDLWTNDSGIDLIGSESDDISSKHLVPRYVNIGLLCVQQSPEDRPTMSDVVTMIGNDTTSLPSPKPPAFQNMRGIESSRLSRTTEENFSVNVVTNSVVEAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02441 832 Pfam PAN-like domain 329 389 IPR003609 -
Trre16g02441 832 Pfam S-locus glycoprotein domain 232 306 IPR000858 GO:0048544
Trre16g02441 832 PIRSF SRK 2 832 IPR024171 GO:0004674
Trre16g02441 832 SUPERFAMILY Protein kinase-like (PK-like) 500 803 IPR011009 -
Trre16g02441 832 Pfam Protein tyrosine and serine/threonine kinase 519 784 IPR001245 GO:0004672|GO:0006468
Trre16g02441 832 FunFam Uncharacterized protein 491 590 - -
Trre16g02441 832 ProSiteProfiles Protein kinase domain profile. 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02441 832 SMART serkin_6 515 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02441 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Trre16g02441 832 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 126 808 - -
Trre16g02441 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Trre16g02441 832 SMART blect_4 35 155 IPR001480 -
Trre16g02441 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 793 - -
Trre16g02441 832 Gene3D - 23 153 IPR036426 -
Trre16g02441 832 Gene3D Phosphorylase Kinase; domain 1 489 590 - -
Trre16g02441 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 152 - -
Trre16g02441 832 CDD STKc_IRAK 521 785 - -
Trre16g02441 832 ProSiteProfiles PAN/Apple domain profile. 329 415 IPR003609 -
Trre16g02441 832 Pfam D-mannose binding lectin 80 180 IPR001480 -
Trre16g02441 832 Gene3D Transferase(Phosphotransferase) domain 1 591 792 - -
Trre16g02441 832 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Trre16g02441 832 Pfam Domain of unknown function (DUF3403) 787 832 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02441 Trre-Chr16 20111499 20114799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02441 434 800 Receptor kinase-like Gene Family AT4G23190 53.619 2.44e-125 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02441 PK_Tyr_Ser-Thr 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02441 - - psat:127086248 1224.15