Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02434 ATGGCACGAGAAATATTGATTCTTAGAAGGCTTGATCATCCCAATATCATTAAACTGGAAGGTTTGATTACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTACAGGGCTCCTGTCAAAACCAGAAATCAACTTCACTGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTAGAGCACTGTCACTCAAGGGGTGTAATGCACCGGGACATTAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCGAATTTCTGTAATTACGGGAACAAGCAACCTCTAACTAGCCGCGTTGTCACGTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGATTACGGTCCATCTGTGGATATTTGGAGCGTTGGCTGTGTCTTTGCAGAGTTACTAGTTGGGAAGCCTATACTTAAGGGGAGAACAGAGGTTGAACAATTGCACAAAATATTCAAGCTTTGTGGCTCTCCGCCCGACAAATACTGGAAAAAGACCAGACTTCCTCACGCAACTTTGTTCAAGCCACAACAACCATATGATAGTTGCCTAAGAGAGACATTTAAAGATTTTCCTGCAACCAGTGTAAATCTGTTACAAACTCTTCTTTCTGTTGACCCAAACAAACGCGGAACTGCTTCATCTGCTCTCTCATCGGAGTATTTCAAAACTAAACCTTATGCATGCCATGCGACCCATCAAGCTTACCAGTATACCCACCTAACAAAGAGATCGATGCCAGCCAAACATGAGGAGGAGACAAAAAGGAAAAAGATTGGCGGGAGAGGTTCTGGACCTGAATCAAGAAGACCATCAAGAAAACCAGTAAGACCAAATAAATTACCCATAGCACAGGATTTGAAAAGTGAAGTTCAAACTACGCAAAAGATGGATGATAGATCAATCCACATCCTTAAAGAAGAGAACACTAACATATGTGATGAGGCATCAAAGCCATCCAATGGTAAAGCAGAAGATGCTTCTCATATGAAGAATGCATCTCAAGCAGATGTTCCCTTTCATGGACCATTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACACTACTTCAATTAGATCACACACTCGATCTATTTCTAAAGGACATATATTTAATTCAAGGGAAGTTTCTGATGATAATCGAAACAATGAAAATAAAGAAGTTTTTGGGTAA 1230 0.4008 MAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFTGLLSKPEINFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFCNYGNKQPLTSRVVTLWYRPPELLLGSTDYGPSVDIWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDKYWKKTRLPHATLFKPQQPYDSCLRETFKDFPATSVNLLQTLLSVDPNKRGTASSALSSEYFKTKPYACHATHQAYQYTHLTKRSMPAKHEEETKRKKIGGRGSGPESRRPSRKPVRPNKLPIAQDLKSEVQTTQKMDDRSIHILKEENTNICDEASKPSNGKAEDASHMKNASQADVPFHGPLQVSKSSGFAWAKRRKDDTTSIRSHTRSISKGHIFNSREVSDDNRNNENKEVFG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02434 409 MobiDBLite consensus disorder prediction 256 286 - -
Trre16g02434 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Trre16g02434 409 PANTHER CELL DIVISION PROTEIN KINASE 2 238 - -
Trre16g02434 409 SMART serkin_6 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02434 409 MobiDBLite consensus disorder prediction 361 409 - -
Trre16g02434 409 MobiDBLite consensus disorder prediction 391 409 - -
Trre16g02434 409 FunFam probable serine/threonine-protein kinase At1g54610 34 275 - -
Trre16g02434 409 Gene3D Transferase(Phosphotransferase) domain 1 36 273 - -
Trre16g02434 409 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02434 409 SUPERFAMILY Protein kinase-like (PK-like) 2 239 IPR011009 -
Trre16g02434 409 MobiDBLite consensus disorder prediction 252 309 - -
Trre16g02434 409 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Trre16g02434 409 Pfam Protein kinase domain 2 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02434 409 MobiDBLite consensus disorder prediction 365 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02434 Trre-Chr16 20073160 20075320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02434 3 271 Core Cell Cycle Gene Families AT5G10270 46.959 4.92e-86 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre16g02434 Pkinase 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02434 - - gmx:100784406 627.476