Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02425 ATGGCTAAGTCTTACTCTTTGGTTCCTTTGGCATTCTTCACATTGCTCTTCGTATTACAAACCATGGCTCACATTCCCATTGACTCAAATTGGTACGATGCTCATGCAACCTTTTATGGTGACATGCAAGGTGGTGAAACCATGCAGGGGGCTTGCGGTTATGGTGATCTCTTCCAACAAGGATATGGACTTGAAACCACGGCACTAAGCACCGCTCTATTCCATGAAGGCTATGCTTGTGGTGCATGTTTTGAGATCAAGTGTGTCAATGATCCCCAATGGTGCAAAAAAGATGTGTACTCAATCACTGTAACAGCCACAAATTTTTGTCCTCCGAATTACAGCAAACCTGATGGCAATTGGTGTAATCCTCCGCAAATGCATTTCGACTTGAGTATGAAGATGTTTACAACTATCGCCATTTACGAAGCAGGAATCGTCCCAGTTCAATATCGACGTGTTCCATGTGTCAAAAATGGTGGTGTTAGATTTGAGCTTAGGGGAAACCCTTACTTTTTGATGGTTTTGGTGTACAATGTTGCTAACGCCGGTGATGTTTCTCGTGTGAGTATCAAAGGGTCTAATACTAATTGGGCTCCCATGACACACAATTGGGGACAATTTTGGGATACTGGAATTAATTTGGTTGGTCAAAGCTTGTCATTGTGGGTTACTACAAGTGATGGAAAAGCTTTGGAGTTTGATTCTGTTGTTCCTTTTAATTGGCAATTTGCACAAACCTATGAAAGCTCTATAAATTTTTAA 765 0.4144 MAKSYSLVPLAFFTLLFVLQTMAHIPIDSNWYDAHATFYGDMQGGETMQGACGYGDLFQQGYGLETTALSTALFHEGYACGACFEIKCVNDPQWCKKDVYSITVTATNFCPPNYSKPDGNWCNPPQMHFDLSMKMFTTIAIYEAGIVPVQYRRVPCVKNGGVRFELRGNPYFLMVLVYNVANAGDVSRVSIKGSNTNWAPMTHNWGQFWDTGINLVGQSLSLWVTTSDGKALEFDSVVPFNWQFAQTYESSINF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02425 254 SUPERFAMILY Barwin-like endoglucanases 30 179 IPR036908 -
Trre16g02425 254 Gene3D - 20 156 IPR036908 -
Trre16g02425 254 Gene3D - 158 254 IPR036749 -
Trre16g02425 254 SMART dpbb_1 66 151 IPR007112 -
Trre16g02425 254 PANTHER EXPANSIN-A15 11 250 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Trre16g02425 254 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Trre16g02425 254 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Trre16g02425 254 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Trre16g02425 254 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Trre16g02425 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Trre16g02425 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Trre16g02425 254 CDD DPBB_EXPA_N 31 156 - -
Trre16g02425 254 Pfam Lytic transglycolase 66 151 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02425 Trre-Chr16 20023447 20024615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02425 27 254 Expansin Gene Family AT5G39280 64.474 6.05e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02425 - - gmx:100789595 366.696