Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02423 ATGGATGAATACCATTGCGATGCATGCCCAAATTTTTCTCCCACGGACTTTGACTCACAAAATATTTCCTCATGCCCCAACGATATCTACTTCAACATAGAGTTTGAGTGTACAAATATGTACGTATTGAGTGCTAGAAAGTTTCAAACTATTAGCGACACAAAGTGCTACACATTTTCAAATATCACGAAGGATAAAATAATGCAAGAAACTACCATCGAATCGTGGCTTTTTCAAATGGATGTTCCTCAAGATGCTTTTAGGTTGGTAGTGGCAAAAATCTTGGAATGTGCTTGTGATATGGATAGGGCATATCAGAATTTAAGGGTTCTTCCTATTCGGGTCAATCTTGTCGTTACAAGGGCTAGCGAAGATGAAAGTGATGAAGATGACGATAAGAGAAGTGACGAATGTATCGAAAGCGATGAAGCGGAAAAGTCTTGTGTTGAGGGATCAGAGACAATGAAAATTGAAATAGAGAAAAACTGTGCAATCTGTTTTGAAAATTTTGATTTTAATGTTGGAGTTCCTATGCCATGTATGCACGTGTTTCATATAAAATGTATCCGCGATTGGTTAGAGAAAGGCAATACTTGTCCTTTATGTAGGTTTAAATTGCCCACTAATTAA 630 0.3714 MDEYHCDACPNFSPTDFDSQNISSCPNDIYFNIEFECTNMYVLSARKFQTISDTKCYTFSNITKDKIMQETTIESWLFQMDVPQDAFRLVVAKILECACDMDRAYQNLRVLPIRVNLVVTRASEDESDEDDDKRSDECIESDEAEKSCVEGSETMKIEIEKNCAICFENFDFNVGVPMPCMHVFHIKCIRDWLEKGNTCPLCRFKLPTN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02423 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 206 IPR013083 -
Trre16g02423 209 Pfam Ring finger domain 162 203 IPR001841 -
Trre16g02423 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 207 - -
Trre16g02423 209 SMART ring_2 163 202 IPR001841 -
Trre16g02423 209 SUPERFAMILY RING/U-box 162 207 - -
Trre16g02423 209 ProSiteProfiles Zinc finger RING-type profile. 163 203 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02423 Trre-Chr16 19993321 19993950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02423 163 209 C3H Transcription Factor Family AT5G01980 50.000 6.47e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02423 - - cam:101499491 232.261