Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02421 ATGGAATCTTCATGCTTTGGTTCTAATGAGGAAGTCTCACTAAAGCAAAAATGGAAATCCACTACAGAAGAGACAACAAAATCTAGTAGTGAGAATGGTTGCTTCGATTGTAATATTTGCTTAGAATCAGCACATGATCCTGTGGTTACACTCTGTGGTCACCTGTATTGTTGGCCATGTATATACAAGTGGCTTAATGTCCAAACCTCTTCTGTTGAACCAGATAAGCAGCCGACATGTCCAGTTTGTAAAGCTGAGATATCCCATGCTTCATTAGTCCCACTTTACGGCCGAGGAAAATCTAATTCCGAAACTGAAACCAAGAAACTCCAGGTAGGTTTAGGTATACCTCATAGACCACCTCCGTACAACTTGAATGCTATGTTAACTTCTAATCGTGCATCAAATTCACATCACGATGAGCAACTCCGTCCGAATTATTTCCAGTCACAATCCCGGCCGATTCATTATCAGCACTACATCCCTCACCTTTATGGAGATCATGGTGCCAATGGATTACCTTATCTAGGTGGTGCTGCTATGACCAGTTTCTTCGATCCTGTGGTCGGTTTGTTTGGGGAGATGGTGTTGACAAGGATTTTCGGTGTCTCTGATGCAAATATGTTTGCTTACCCTCAAAATGGAAGCACCAGTCCTAGAATGAGGAGACAGGAGATGCAGATTGACAAGTCTTTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTCTGA 753 0.4157 MESSCFGSNEEVSLKQKWKSTTEETTKSSSENGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLNVQTSSVEPDKQPTCPVCKAEISHASLVPLYGRGKSNSETETKKLQVGLGIPHRPPPYNLNAMLTSNRASNSHHDEQLRPNYFQSQSRPIHYQHYIPHLYGDHGANGLPYLGGAAMTSFFDPVVGLFGEMVLTRIFGVSDANMFAYPQNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02421 250 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Trre16g02421 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Trre16g02421 250 SUPERFAMILY RING/U-box 34 96 - -
Trre16g02421 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Trre16g02421 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Trre16g02421 250 CDD RING-HC_AtRMA-like 35 85 - -
Trre16g02421 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre16g02421 250 SMART ring_2 37 83 IPR001841 -
Trre16g02421 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 153 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02421 Trre-Chr16 19982913 19983665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02421 15 236 C3H Transcription Factor Family AT4G27470 48.899 5.82e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02421 K10666 - gmx:100817526 345.125