Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02413 ATGGGAATTCCAGAGAAAGATCCTCTCTCACAATTGAGTTTACCACCTGGTTTCAGATTCTTCCCTACTGATGAGGAACTTCTTGTTCAGTATCTATGTCGCAAAGTTGCTGGCCACCATTTTTCTTTGCCAATTATTGCTGAAATTGATTTATACAAATTCGATCCCTGGGTTCTTCCAGGCAAGGCAAATTTTGGTGAGAAAGAATGGTACTTTTTCAGTCCGAGGGACAGAAAATATCCGAATGGTTCTCGACCCAACAGAGTTGCTGGGTCGGGATACTGGAAAGCAACGGGAACTGACAAAATTATCACAACTGAAGGTAGAAAAGTTGGCATAAAAAAAGCACTTGTTTTCTATATTGGAAAAGCACCAAAAGGAACAAAAACTAATTGGATTATGCACGAGTATCGCCTTCTTGATGCTTCGCGTAAACACAACCTTGGAAGCTCAAAATTGGATGATTGGGTTCTATGTCGCATATACAAGAAGAACTCAAGCTTACAAAAGGAAATTCAATCATTTTCAAGCAAAGAATGCAGCAACGGGTCATCGCCTTCATCTTCGTCACACGCCGAAGACATGCTAGACACCTTCCCGGAAATCAATGACCAAAGCTTTGAGCTGCCACGAGTGACATCGCTTCGAATGCAACATCAAGAGGAGAAGTTTGGGTTTCATAACATGGGTGCTGGAATTTTCTCTGATTGGGTTAGCCCTACGGATCTTGAATCGATACCGGAATTTGATTCAGAGAGCCAAACACAAGGGATGATGAATTATAGTTGTAACGACTTTTGCGTTCCTTCAGTGCCACCATTCGGCCACATGGACTTGTCGTCCACATCCAGGAACCCCACGGACGAAGAGGTTCAAAGTGGCATGAGGACAAACCGGGTTAACGAAATTTCTAGTTTATATCAACATAATCCTAATGGATTTTTGTCGAATTTAGATGACCCGTTTCGGTTTGGGTATTCAGGTCATTAA 990 0.4222 MGIPEKDPLSQLSLPPGFRFFPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDASRKHNLGSSKLDDWVLCRIYKKNSSLQKEIQSFSSKECSNGSSPSSSSHAEDMLDTFPEINDQSFELPRVTSLRMQHQEEKFGFHNMGAGIFSDWVSPTDLESIPEFDSESQTQGMMNYSCNDFCVPSVPPFGHMDLSSTSRNPTDEEVQSGMRTNRVNEISSLYQHNPNGFLSNLDDPFRFGYSGH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02413 329 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Trre16g02413 329 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Trre16g02413 329 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Trre16g02413 329 MobiDBLite consensus disorder prediction 175 194 - -
Trre16g02413 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 211 - -
Trre16g02413 329 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Trre16g02413 329 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02413 Trre-Chr16 19932747 19934090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02413 1 265 NAC Transcription Factor Family AT4G27410 64.336 2.16e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g02413 NAM 8.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02413 - - gmx:100811301 504.597