Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02398 ATGGAAACTAAGAAAACTGTTGTGCATCTAGGAAGACCGTTTCTAAGACCAGATCAATGGGATGTGCTAACTCCATTGTACAAAGATTTTGATCTGATACGTTCTGAAGGTCCAAGATACGGTGAAATGTTCAAGTGCAAGTTGAAATCTACCAAGGAGGTTGTAGCTGTTAAGATTTTAACCATTCCAGAAGACCACAAAAGCAATGGAATTCCATACAGTATCTTGAATCACGTCTCTATCCTCAAAGCGTTAAAGCATGAAAATATAGTCAAATTGGAAACAGTGATAAGAACTGATGAGGATGTGGAAGACGTATATCTCGTTTTCAAGCATATTGACACTAGTCTTAAAAAATTCCTTGCCACTCCGTTCCCTTTTGACATTAAAAAACTTGGAAAACCTTTGCTACGTCAAGCTCTTTCTGGATTGGCATACATTCATATTCAGAAAATTATACACAGAGATTTGAAACCTCATAACATTCTGGTTTCATTTAAAAATCAGGAGATCAATGAAGTGAAGCTAACTGACTTTGGTGTGGCAAAATCTATTGCACCTCCTCTTTCACCCTACTCTATTCATATGGGTAATCCTTGTTACAAAGCACCTGAACTTTTGCTAGGTTTTACCAATTACTCAACTGCAGTTGATATCTGGTCTATGGGCTGCATATTTGCTGAGATGATTAAGCGCCAACCTCTGTTCGTTGGTAAAGATGGACCGAAGATATTGACTGAGATATTTTGGTTGCTTGGCACTCCAACAGAAGAAACCTGGCCTGGTGTGTCTTCTATATGCACTTTCATTAAAGCATTTGACCCTCCAATAAAGCCGAAGGACCTTGCAGCTGAATTCCCTATGCTTGAACCAGATGGCCTTGATCTTCTTTCAAAAATGCTTTGCCTATGCCCAAATAGAAGGATTTCAGCTGATGAAGCACTTGACCACCCATATCTTCGACCTTCCGCCCCCTGA 978 0.3967 METKKTVVHLGRPFLRPDQWDVLTPLYKDFDLIRSEGPRYGEMFKCKLKSTKEVVAVKILTIPEDHKSNGIPYSILNHVSILKALKHENIVKLETVIRTDEDVEDVYLVFKHIDTSLKKFLATPFPFDIKKLGKPLLRQALSGLAYIHIQKIIHRDLKPHNILVSFKNQEINEVKLTDFGVAKSIAPPLSPYSIHMGNPCYKAPELLLGFTNYSTAVDIWSMGCIFAEMIKRQPLFVGKDGPKILTEIFWLLGTPTEETWPGVSSICTFIKAFDPPIKPKDLAAEFPMLEPDGLDLLSKMLCLCPNRRISADEALDHPYLRPSAP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02398 325 ProSiteProfiles Protein kinase domain profile. 29 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02398 325 Pfam Protein kinase domain 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02398 325 SUPERFAMILY Protein kinase-like (PK-like) 40 322 IPR011009 -
Trre16g02398 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre16g02398 325 SMART serkin_6 27 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02398 325 PANTHER CELL DIVISION PROTEIN KINASE 39 320 - -
Trre16g02398 325 Gene3D Transferase(Phosphotransferase) domain 1 130 324 - -
Trre16g02398 325 Gene3D Phosphorylase Kinase; domain 1 24 124 - -
Trre16g02398 325 FunFam Mitogen-activated protein kinase 131 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02398 Trre-Chr16 19861677 19864199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02398 40 321 Core Cell Cycle Gene Families AT3G48750 42.958 6.43e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre16g02398 Pkinase 3.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02398 K02206 - psat:127128144 320.087