Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02397 ATGGTATTTTCAGGAAATCACCATGGTTGGGAAAACACAAAAACCTTCACACTCCAAGTCCTAACAGGAAGGTGGTTTATGGTGTTTTCATCATTTATGATCATGTCAGTATCTGGAGCAAGCTACATGTTTGGCTTATATTCAAGAGAAATAAAATCAGTTTTGGGCTATGACCAATCCACTCTTACTCTCTTAAGCTTCTTCAAAGATTTAGGCTCTAACATAGGCATTCTTTCAGGCCTACTCAATGAAATCACACCTCCTTATGTTGTCTTAACAATTGGTGGAATTCTCAACTTTTTTGGCTATTTCATGATATGGCTTGCAGTCACAAGAAAAATTCCTAAACCACCAATATGGAATATGTGTTTATACATATTCATTGGAGCAAATTCTCATTGTTCAACCAACACTGGAGCTTTAGTTACAAGTGTAAAGAATTTCCCTGGTAGTAGAGGTGTTGTTATAGGTCTTTTGAGTGGTTATCTTGGTTTGAGTGGTGCTATAATCACTCAACTCTACTATGCTTTCTATGGAAATGACTCAAAATCTTTAATTTTGCTTATGGCTTGGTTACCAACTGCTGTAACTTTTGTTTTTATGCCGGTTATTAAACACCATAAGATGGTTGAACAACCTAATGATTCTAAAGCTTTCTATAATTTCCTTTACATGACTTTAATCCTTGCAGGGTTTCTCATGATAATGATCATAGTGCAAAAATGTTTCAACTTCACTAAGAGTGAGTATCATGTTACTTCCACTTTGATGCTTCTCTTGCTCATCATCTTGCCTCTTATTGTTGTTATTATGGAAGAACAAAGGATTTCGAAGAACAAAAACGGAGACGATTCGAATATAGCTATAGAGAAGAATCTCCAAGCTAGAGTAGAGAGAGAGACTACTCAAAATGAACCCCTTTCAAGAGGTGAAGATCATACAATACTTCAAGCAATTTTCAGCCTTGACATGTTGACTCTTTTTGTAGCCACAATTTGTGGACTTGGTGGAACTCTTACTGTGGTAAATAACTTGAGTCAGATAGGATTATCTTTAGGATATCCTGCACATAGTATAACCACATTTGTGTCCTTAATGGCAATATGGATTTATCTAGGTAAAGTTACACAAGGGGTTATCTCAGAATTTATCATAACCAAGTTAAAACTCCCTAGGCCATTAATGCTCACATCAATCCTTATATTTTCTTGTTTTGGTCACCTTCTAATTGCATTTGATGTACCAAATGGTCTCTATGTAGCATCAATTATCATTGGTTTTTGTTTTGGAGCAAATTGGCCAGTACTATTTTCAATCATATCTGAACTATTTGGTCTTAAATATTACTCAACATTGTACAATGTTGGGTCAATAGCAAGTCCAATTGGGTCATATTTGTTAAGTGTAAGGGTTGCTGGTTACTTGTATGACAAGGAAGCCACAAGACAAATGGAAATATTGGGATTAAAGAGGAAGAAAGGGGAGGAATTGAATTGTAATGGGAGTGAGTGCTACAAATTGGCTTTCATTATAATCACTGCTGTTAGTCTCTTTGGGGCACTTGTGTCTCTAAGTTTGGTGATAAGGACTAGAAAGTTTTATAAAGGTGATATATACAATAAGTTCAGAGAGGAAGCTAGAAGTGTTGAAAATGAATTGGTTGTGACTCAGAACAAGGTTGGACCTGCCTAA 1692 0.3587 MVFSGNHHGWENTKTFTLQVLTGRWFMVFSSFMIMSVSGASYMFGLYSREIKSVLGYDQSTLTLLSFFKDLGSNIGILSGLLNEITPPYVVLTIGGILNFFGYFMIWLAVTRKIPKPPIWNMCLYIFIGANSHCSTNTGALVTSVKNFPGSRGVVIGLLSGYLGLSGAIITQLYYAFYGNDSKSLILLMAWLPTAVTFVFMPVIKHHKMVEQPNDSKAFYNFLYMTLILAGFLMIMIIVQKCFNFTKSEYHVTSTLMLLLLIILPLIVVIMEEQRISKNKNGDDSNIAIEKNLQARVERETTQNEPLSRGEDHTILQAIFSLDMLTLFVATICGLGGTLTVVNNLSQIGLSLGYPAHSITTFVSLMAIWIYLGKVTQGVISEFIITKLKLPRPLMLTSILIFSCFGHLLIAFDVPNGLYVASIIIGFCFGANWPVLFSIISELFGLKYYSTLYNVGSIASPIGSYLLSVRVAGYLYDKEATRQMEILGLKRKKGEELNCNGSECYKLAFIIITAVSLFGALVSLSLVIRTRKFYKGDIYNKFREEARSVENELVVTQNKVGPA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02397 563 Pfam Nodulin-like 24 270 IPR010658 -
Trre16g02397 563 Pfam Major Facilitator Superfamily 327 531 IPR011701 GO:0022857|GO:0055085
Trre16g02397 563 SUPERFAMILY MFS general substrate transporter 217 533 IPR036259 -
Trre16g02397 563 Gene3D MFS general substrate transporter like domains 212 544 IPR036259 -
Trre16g02397 563 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 25 537 - -
Trre16g02397 563 Coils Coil 539 559 - -
Trre16g02397 563 CDD MFS_Mch1p_like 23 520 - -
Trre16g02397 563 SUPERFAMILY MFS general substrate transporter 10 205 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02397 Trre-Chr16 19852006 19853697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02397 14 545 Nodulin-like Gene Family AT2G39210 60.465 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02397 - - gmx:100789645 818.92