Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02394 ATGAACGAGAAAGCCAACGTTTCAAAGGAGCTCAACGCTAGACACAAAAAGATATTGGAAGGACTTCTTAAATTACCAGAGAATAGAGAATGTGCTGATTGTAAAGCCAAAGGACCAAGATGGGCAAGTGTCAATCTTGGCATCTTTATTTGCATGAATTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGTATTGAAAACTTCATTCGTGCCAAGTATGAAGACAAGAGATGGGTTGCAAGGGATGCTAAACCAAAATCACCTTCTAGACTGCTAGAAGAGAAAAGTCCTTCACAATGGCAAAAGCCTGTGGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCGGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAGGTAACTCCAGTGGCTAAACACCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTACAAGCTGAAACATCACAGACGACTGGCACATCTAACAATCCCCCTCCAAAAGTTGACTTTGCTACCGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGAGCTCTGACGCAGCTGATGCGTCTGCTGACGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGCTGAGAAAACTGCCACCAGGAAATCGGTTGAGAGTACACCCCAACCCACCTCTGGAATTGAGGATCTATTTAGTGACTCGTCTTCAGTGACACCAAGTTCTGCTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAAAAGAACAATATAGTATCTCCATTTGCTATGCATCAACAGCAGTTGGCTATGCTGGCACAGCAACAATCTCTTCTAATGGCTGCTGCTGCAGCTAAATCTTCTAGTGGGGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTCAATATTCCTATCCAAAATTGGCCAGCTGCGAGCTACCCAATTCCTGGAGTAATGCCCGTGGGTAGCCAGGGAGACCTGCAGAAAATTATGCAGGCAATGAACATGACTTCCGCACATCCAGCAGAGAGCTCAGTTCAGTATCCACCATCTAGTTATTTTACTATGTCACAAGTTGCTCCAGTTAATGGCACAACGATAACGGCAGCGAGTAACCCTCAGTCAGCTACTCCGGTATCATCGAACAATACAAAGACAGCGAATGATTATGATTTTTCCTCATTAACACAAGGAATGTTTGCGAAACCCTGA 1398 0.4328 MNEKANVSKELNARHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMNCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDAKPKSPSRLLEEKSPSQWQKPVENTFEERKKIQPSNAIPATRISVLAPPKGHVQVTPVAKHQHIEKVEPLVPQVQAETSQTTGTSNNPPPKVDFATDLFDMLSMDDPNEKSSDAADASADDDNNWAGFQSAAETSTAEKTATRKSVESTPQPTSGIEDLFSDSSSVTPSSALEKPQKDVKNDIMSLFEKNNIVSPFAMHQQQLAMLAQQQSLLMAAAAAKSSSGDAKYPANVQQPGLNIPIQNWPAASYPIPGVMPVGSQGDLQKIMQAMNMTSAHPAESSVQYPPSSYFTMSQVAPVNGTTITAASNPQSATPVSSNNTKTANDYDFSSLTQGMFAKP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02394 465 CDD ArfGap 19 117 - -
Trre16g02394 465 MobiDBLite consensus disorder prediction 127 149 - -
Trre16g02394 465 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Trre16g02394 465 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Trre16g02394 465 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Trre16g02394 465 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Trre16g02394 465 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Trre16g02394 465 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre16g02394 465 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Trre16g02394 465 MobiDBLite consensus disorder prediction 196 303 - -
Trre16g02394 465 MobiDBLite consensus disorder prediction 229 243 - -
Trre16g02394 465 MobiDBLite consensus disorder prediction 249 300 - -
Trre16g02394 465 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Trre16g02394 465 MobiDBLite consensus disorder prediction 199 217 - -
Trre16g02394 465 MobiDBLite consensus disorder prediction 429 452 - -
Trre16g02394 465 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Trre16g02394 465 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 464 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02394 Trre-Chr16 19829643 19837196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02394 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 1.40e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02394 K12486 - gmx:100807561 681.019