Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02387 ATGGCCACCACAACCACAACAACAGAACAATACACCTCACGTGCTTCACACATGCACGACACCACAACAGACAACGACGATGACGACGACACAATTAACGGAAGTGAACCGGAGAATAATCACACCGATGATGACAACGAAGAAGAAGAGCAGCAACATGTAAACTACAGAAGCTCAATAACTTCTTCATGTATTAGTCGAATTATAGACCCAAGAGCAAAATGGGTGCAAGAATGGAACAGAGTTTTCTTGTTAGTATGTGCAGCAGGGTTGTTTGTGGATCCACTTTTCTTCTATGCTCTTAACATCAGTGACTCATTTATGTGTCTCTTCATCGACGGTTGGTTCGCCGTCACCGTTACGGTTCTCCGTTGCATGACTGATGCTTTGCACCTTTGGAATATGTTCCTCCGTTTTAAAACGGTGAAACGCAGCTCATTAACATTCGCAACCAGTTCGTCCACCGCTGATGCTGGCTGTTCCGTTGCTCTAAGTTATCTTAAGTCCCGCCGTGGCTTCTTCTTTGACCTCTTCGTTATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGGAATTCCTTCCTTGTTGGAGCAAGGTTCAATTACGTTGGTGATGACAGTATTATTAATTGTATTTCTCTTTCAGTACCTTCCCAAAATTTATCACTCTGTATGCCATCTACGACGCACACAAAACCTCTCTGGTTACATTTTTGGAACTGTTTGGTGGGGAATTGCCCTTAACATGATCGCGTATTTTGTCGCTTCCCACGCTGCGGGGGCATGTTGGTATTTGTTGGGGATCCAAAGAGCAGCCAAATGTCTGAAAGAACAATGTCTGAAAACAAATGGTTGTGGGAATCAAATATTGTCTTGTCATAAGCCAATATATTATGGAAGTACAAGTTTGTTGAATAAGGATATAGCAAGATTAGCATGGGCAAAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCTGATAAATTCAATTATGGTGCTTATAGATGGACTGTTCAGCTTGTCACTAATGATAATCGACTAGAAAAAGTACTTTTCCCTATTTTTTGGGGACTAATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACAACAGATTGGCTTGAAGTAGTTTTCAACATCATAGTCTTGACGAGTGGGCTTCTTCTTGTGACTATGTTGATTGGAAACATCAAGGTATTTTTGCATGCAACAACATCAAAGAAGCAAGTGATGCAATTGAAAATGAGGAATGTTGAATGGTGGATGAGGAAAAAACATTTGCCACAGGGGTTTAGACAACGTGTGAGAAACTATGAAAGACAACGTTGGGCAGCTATGCGCGGGGTTGATGAATGTGAGATGACCAAAAATCTTCCTGAAGGTTTAAGAAGAGACATTAAATACCATCTTTGTCTCGATTTGGTCAGACAGGTGCCATTGTTTCAACATATGGATGACCTAGTTCTAGAGAACATATGTGACCGAGTGAAATCTCTTATATTCACCAAGGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAAAGAATGTTATTTGTAGTAAGGGGTCACCTTCAAAGTAGCCAAGTTCTAAGAGATGGGTTGAAAAGTTGTTGCATGTTAGGACCAGGAAACTTCACTGGGGATGAGCTCCTTTCATGGTGTTTAAGGAGACCCTTTATAGAGCGACTTCCACTTTCAACATCAACACTTGTAACACTTGAAACAACAGAGGCTTTTGGTCTTGAAGCAGAGGATGTTAAGTATGTCACACAACATTTCAGGTACACATTTGTGAAGGAAAAAGTGAAGAGAAGTGCTAGGTATTACTCACCAGGGTGGAGAACTTGGGGTGCTGTGGCAATTCAATTGGCATGGAGAAGATACAGGCATAGGTTGACTTTGAACTCATTGTCCTTTATAAGACCTAGGAGGCCCTTGTCAAGATGTTCTTCATTGGGAGAGGATAGGCTTCGACTCTACACTGCTTTGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGACTTTTGA 2037 0.4168 MATTTTTTEQYTSRASHMHDTTTDNDDDDDTINGSEPENNHTDDDNEEEEQQHVNYRSSITSSCISRIIDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALNISDSFMCLFIDGWFAVTVTVLRCMTDALHLWNMFLRFKTVKRSSLTFATSSSTADAGCSVALSYLKSRRGFFFDLFVILPIPQIVLWVGIPSLLEQGSITLVMTVLLIVFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCLKTNGCGNQILSCHKPIYYGSTSLLNKDIARLAWAKNREARSTCLNGPDKFNYGAYRWTVQLVTNDNRLEKVLFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQVMQLKMRNVEWWMRKKHLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGLKSCCMLGPGNFTGDELLSWCLRRPFIERLPLSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02387 678 ProSiteProfiles cAMP/cGMP binding motif profile. 481 560 IPR000595 -
Trre16g02387 678 Gene3D Helix hairpin bin 406 472 - -
Trre16g02387 678 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 638 - -
Trre16g02387 678 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
Trre16g02387 678 SUPERFAMILY Voltage-gated potassium channels 71 402 - -
Trre16g02387 678 Gene3D Jelly Rolls 479 597 IPR014710 -
Trre16g02387 678 SUPERFAMILY cAMP-binding domain-like 407 595 IPR018490 -
Trre16g02387 678 FunFam cyclic nucleotide-gated ion channel 4 479 597 - -
Trre16g02387 678 CDD CAP_ED 481 587 IPR000595 -
Trre16g02387 678 Pfam Ion transport protein 79 398 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre16g02387 678 MobiDBLite consensus disorder prediction 1 18 - -
Trre16g02387 678 Pfam Cyclic nucleotide-binding domain 502 589 IPR000595 -
Trre16g02387 678 MobiDBLite consensus disorder prediction 1 57 - -
Trre16g02387 678 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02387 Trre-Chr16 19756336 19769129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02387 65 677 Ion Channels AT5G54250 77.868 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02387 K05391 - gmx:100783341 1107.43