Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02373 ATGCCAAATAAAAGCTTGGATTGTTTTCTCTTCGATGCAGTGAAAAGAAGGATGCTAGATTGGGGAACACGTGTTCGAATAATTGAAGGGATTGCCCAAGGATTACTTTATCTTCATCAATACTCCAGGTTCCGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTAGATACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCTAGGATATTCGGTGACAATGAACTTCAAGCAAATACAAATCGGATAGTTGGAACTTATGGCTACATGTCTCCGGAATATGCTCTAGAAGGCCTTTTCTCAATTAAGTCTGACGTTTTTAGCTTTGGGGTTCTTCTGTTAGAGATTATAAGTGGCAAAAAGAATACTGGTTTTTATCAAACAAACTCTTTCAATCTTCTTGGATATGCTTGGGATCTATGGACAAATGATTCCGGAATGGAGCTGATTGATTCAGAATTGGATGATATCTCCAGCAAGCATTTAGTACAAAGATATGTGAATATAGGACTTCTATGTGTTCAACAAAGTCCACAAGATAGGCCAACTATGTCTGATGTTGTATCAATGATTGGTAATGACACTACATCCCTTCCTAGTCCAAAACCACCAGCATTTCAAAATGTGAGGGGTATTGTTGAAAATAGAGGACTCCCTAAAAGCATAGAAGAAAACTTTTCTGTGAATATTATCACAGATTCAATAGTTGAAGCAAGATGA 732 0.3689 MPNKSLDCFLFDAVKRRMLDWGTRVRIIEGIAQGLLYLHQYSRFRIIHRDLKASNILLDTNMNPKISDFGMARIFGDNELQANTNRIVGTYGYMSPEYALEGLFSIKSDVFSFGVLLLEIISGKKNTGFYQTNSFNLLGYAWDLWTNDSGMELIDSELDDISSKHLVQRYVNIGLLCVQQSPQDRPTMSDVVSMIGNDTTSLPSPKPPAFQNVRGIVENRGLPKSIEENFSVNIITDSIVEAR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02373 243 SMART serkin_6 3 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02373 243 SUPERFAMILY Protein kinase-like (PK-like) 1 210 IPR011009 -
Trre16g02373 243 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02373 243 Gene3D Transferase(Phosphotransferase) domain 1 1 203 - -
Trre16g02373 243 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Trre16g02373 243 Pfam Protein tyrosine and serine/threonine kinase 4 194 IPR001245 GO:0004672|GO:0006468
Trre16g02373 243 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 203 - -
Trre16g02373 243 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 211 - -
Trre16g02373 243 Pfam Domain of unknown function (DUF3403) 197 243 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02373 Trre-Chr16 19608219 19609328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02373 1 210 Receptor kinase-like Gene Family AT4G23250 60.849 9.45e-86 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02373 PK_Tyr_Ser-Thr 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02373 - - mtr:11407439 433.335