Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02368 ATGTTACATATTTGGTTCTTATTATTCTTGTACATAAGAACATGCACATCATTTGATAGTTTAACATCAAACCAATTTCTCAAAGATGGCCAAACATTAGTTTCATCTGATGGAACATTTGAGCTTGGTTTCTTCAGTCCAAGAGATTCAACAAATCGATATTTGGGTCTATGGTTCAGAAACGTGTCACCTCAAACACTGGTTTGGGTAGCAAACAGAGAATCACCACTTAACAATTCAAGAGGATTCTTAAGAATCAATTCAAAAGGTGTTCTTATTGTTCTTAATGGAACAAACACCACTGTTTGGTCCTCTAAAGTTACAACCAAAGAAGTGAACAACCCAATTGCTCGTGTGTTGGATTCTGGTAATCTTGTGGTACAAAATGGAAAGAATACAAAAGAAGATCATTTTTTGTGGCAGAGTTTTGATTACTTGTGTGACACGTTATTGTTAAATGGGACAAAACTTGGATGGGATTTAGTAACTGGTCATGAAATATTTTTATCATCTTGGAAAAAAAATGATGATCCAGCTATAGGTGAGTATTCTCTAAGAATTTACCGTAAAGGATATCCACAACTTTTCAAATTCAAAGGGTTAGAGAGAAAATTTCGAATAGGGTCATGGAATGGTGTTGGTTTTAGTGGATATCCAACTCTGATACTCAAACAACTACATAGATTTAGGTTTGTTTTCGATGAAAAACAAGTTTATATCGAGAGTGAAACCCTCGATCGATCAATAATGGCAATTTACCGACTTACTCCTTTAGGCCACGGAGAACTTTCAGTTCGGACAAGTAAGACAAGAAACTGGAGAGTGATTTCAACTGGTGAGGAAGATGAATGTGAAAACTATGCATTGTGTGGTACTTATTCTATATGCATTATGGATGGAAATTTTCCAACTTGTGAATGCATGAAAGGGTATGTTCCTAAGTTTCCAAAACAATGGAATATATCATATTGGTCTAATGGTTGTGTTCCCAAGAATAAGTCTAATTGCGAAAATAGTTACAAAGATGGGTTCTTGAGGTATAGTAAAATGAAATTGCCAGACACGTCTTCCTCGTTGTTCAGTAAGATCATGGATCTTGAGGAATGTAGGAATTCGTGTCTAGAAAATTGTTCGTGTTCGGCGTATGCAAATTTGGATATCCGTAATGGCGGAAGCGGTTGTCTACTGTGGTTCGATGAATTGGTCGATGTAAGGAAGTTTTCTCAATGGGGACAAGACCTTTATGTTAGAGTCCCGGCTTCTCAACTAGAAATGAATGTTCCGCTGATGGATCTGATAGTTCCGTTGGAGTCTGGGATAGATCATGTGCTGATTAATGACAGTAGTAGTAACAAACAGAAGCTGGTAGGAATCACGGTTGGAGCAATTAGTTTTGGATTAATGGCTACATGTATAGGCATAATGATATATATAAAGAGAGAAAGAATATTTTATAAGAAGCATTATGAAAATATATTCAAGAGAGAAGACACAGATCCAGAAACATATGATTTTCAAATCATAGCTCAAGCCACCGGAAACTTTTCAAGAAGCAACAAATTGGGTGAAGGTGGCTTTGGACCAGTATATAAGGGTACACTAAGATGTGGACAAGTATTAGCAGTAAAAAGACTTTCAAATGAATCTGGACAAGGTTTGGAGGAGTTTAAAAATGAAATAGCAGTAATTGCAAAGCTTCAACACCGTAACCTTGTCAAACTTCTTGGTTACTGCATTCAAGGAGAAGAAGTAATGTTGATCTATGAATACATGGCAAACAAGAGCTTAGACAATTTTATTTTTGATGAAAATAAAAGAAAGATGCTAGACTGGTCGAAGAGATTCAACATTATTTGTGGCATTGCACGAGGGCTACTTTATCTTCATCAAGACTCTAGATTAAGAATTATTCATAGAGATCTAAAACCTAGCAATATCTTACTAGATGCAAATTTTGGACCAAAAATTTCGGACTTCGGTCTAGCACGTACATTGTTGGGAGATCAAGTCGAGGAAAATACAAAAAGAGTTGCCGGAACCTATGGGTACATGTCTCCAGAATATGCAGTGCGCGGACGTTTCTCGATGAAATCAGATATTTTTAGTTATGGTGTGATAGTTCTTGAAATTGTAACTGGAAAGAAGAACAGAGAATTTTCAGACCGAGAACACTCCCACAATCTTCTTGGACATGCTTGGAGACTTTGGACAGAAGGGAGACAATTAGAACTACTAGATGAAATGTTATGGGAAAAATGCACAACTTCTCAAGTCATGCGATGTATACAAGTGGGTTTATTATGTGTACAACAAAGACCAGAAGATAGGCCAGACATGTCATCAGTACTTTTAATGTTGAATGGTGAGAAAATATTGTCTAAGCCAAAGATTCCTGGATTTTACATTGAAAGAGATCTTACTCCTGAAGATGCTTTGTTGAAAAATTGTGTAATGGTCTTGCCAAATGAAATGACTATTACAGCATTAGAGGCAAGATAG 2499 0.3641 MLHIWFLLFLYIRTCTSFDSLTSNQFLKDGQTLVSSDGTFELGFFSPRDSTNRYLGLWFRNVSPQTLVWVANRESPLNNSRGFLRINSKGVLIVLNGTNTTVWSSKVTTKEVNNPIARVLDSGNLVVQNGKNTKEDHFLWQSFDYLCDTLLLNGTKLGWDLVTGHEIFLSSWKKNDDPAIGEYSLRIYRKGYPQLFKFKGLERKFRIGSWNGVGFSGYPTLILKQLHRFRFVFDEKQVYIESETLDRSIMAIYRLTPLGHGELSVRTSKTRNWRVISTGEEDECENYALCGTYSICIMDGNFPTCECMKGYVPKFPKQWNISYWSNGCVPKNKSNCENSYKDGFLRYSKMKLPDTSSSLFSKIMDLEECRNSCLENCSCSAYANLDIRNGGSGCLLWFDELVDVRKFSQWGQDLYVRVPASQLEMNVPLMDLIVPLESGIDHVLINDSSSNKQKLVGITVGAISFGLMATCIGIMIYIKRERIFYKKHYENIFKREDTDPETYDFQIIAQATGNFSRSNKLGEGGFGPVYKGTLRCGQVLAVKRLSNESGQGLEEFKNEIAVIAKLQHRNLVKLLGYCIQGEEVMLIYEYMANKSLDNFIFDENKRKMLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKPSNILLDANFGPKISDFGLARTLLGDQVEENTKRVAGTYGYMSPEYAVRGRFSMKSDIFSYGVIVLEIVTGKKNREFSDREHSHNLLGHAWRLWTEGRQLELLDEMLWEKCTTSQVMRCIQVGLLCVQQRPEDRPDMSSVLLMLNGEKILSKPKIPGFYIERDLTPEDALLKNCVMVLPNEMTITALEAR 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02368 832 SUPERFAMILY Protein kinase-like (PK-like) 499 792 IPR011009 -
Trre16g02368 832 Pfam S-locus glycoprotein domain 205 315 IPR000858 GO:0048544
Trre16g02368 832 CDD PAN_AP_plant 333 419 - -
Trre16g02368 832 CDD B_lectin 24 145 IPR001480 -
Trre16g02368 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 178 IPR036426 -
Trre16g02368 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 590 - -
Trre16g02368 832 Pfam D-mannose binding lectin 66 173 IPR001480 -
Trre16g02368 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 418 - -
Trre16g02368 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 773 - -
Trre16g02368 832 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Trre16g02368 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 794 - -
Trre16g02368 832 SMART ntp_6 339 418 IPR003609 -
Trre16g02368 832 Coils Coil 831 832 - -
Trre16g02368 832 Gene3D - 14 143 IPR036426 -
Trre16g02368 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 13 143 - -
Trre16g02368 832 SMART blect_4 24 146 IPR001480 -
Trre16g02368 832 Gene3D Phosphorylase Kinase; domain 1 478 590 - -
Trre16g02368 832 Gene3D Hepatocyte Growth Factor 335 415 - -
Trre16g02368 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Trre16g02368 832 ProSiteProfiles EGF-like domain profile. 280 317 IPR000742 -
Trre16g02368 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Trre16g02368 832 CDD STKc_IRAK 521 788 - -
Trre16g02368 832 ProSiteProfiles Bulb-type lectin domain profile. 18 140 IPR001480 -
Trre16g02368 832 ProSiteProfiles Protein kinase domain profile. 515 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02368 832 ProSiteProfiles PAN/Apple domain profile. 336 419 IPR003609 -
Trre16g02368 832 SMART serkin_6 515 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02368 832 Pfam PAN-like domain 336 404 IPR003609 -
Trre16g02368 832 Gene3D Transferase(Phosphotransferase) domain 1 591 796 - -
Trre16g02368 832 CDD EGF_CA 282 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02368 Trre-Chr16 19578449 19582512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02368 467 803 Receptor kinase-like Gene Family AT4G23230 52.941 2.75e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02368 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02368 - - gmx:100790261 1064.29