Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02367 ATGATATACAGGATCATTAAGTTAATCATTTTGTTAATTTTTTCTACTTACATGAAAAAATGCACTTCACTAGACACTTTATCTGAGAATCAATCTATTCTTGATGGACAGAGTTTGATTTCAGCAAAAGGAACTTTTGAATTAGGTTTCTTCAGTCCAGGAAATTCAAAAGGAAGATATTTAGGTATATGGTACAAAAAATTAACCCCTTTAACAATTGTGTGGGTGGCCAACAGAGAAACACCGTTGCACGATAATTTAGGAGTTTTTAAACTCGATCGAAATGGGGTTCTTGTGATTCTCAATGGAATAAACAACATCATTTGGTCCTCGAATGTGTCAAACAAATCCGCGAATAATAATTCGATAACTTCACAGCTATTGGACACGGGAAATCTTGTGTTGAAAATTGGGCAGGACGATGTTTTGTGGCAGAGTTTTGATTATCCAGGTGATACGTTATTGCCGGGAATGAAGCTTGGATGGAACTTATTAACTGGTTTAAACACGTTTCAATTGTGTTGGAAAAGTTTAGATGATCCAGCTAAGGGAGATCATACTGTAAATATTGATATGAGAGGATTTCCGCAACTAGTTATGACGACGGGATCTGGCATAGGATATAGAATGGGATCATGGAATGGACGCGCTTTTACCGGATATCCATCTCAACCATTGAAACTAAAGCAAAGATTTGAATTTGTCATGACTGAAAAAGAAGTTTATCATCGGCATGAAGTTGTTGATAGTTCTATTGTTTCTATATATAAACTCTCCTCTTCAGGACAATGTCAGGCTTTTGTTTGGATAAATGAAACAAGCGATAGGATAGTCATCAACATTGGCATGGAAGATTCTTGTGATAACTATGCAACATGTGGTGCTAATTCTGTTTGCAATATGAGGGGAAACGTTCCGAGATGTGAATGCCTAAAAGGTTATGTTCCTAAGTTTCCTGAACAATGGAATATTTCATATTGGTCTAGTGGTTGTGTTCCGAAAATTAAGTCATTTTGTGGAAACAATAACACAAGTGGTTTCTTGAAATACCGAGAAATGAAATTGCCAGACACGTCTTCATCATGGTACAATAAAACCATGAACCTAGTGGAATGCCAAAAAGTGTGTATGAAAAATTGTTCGTGTACGGCTTATACAAATGTGGATATCCGAAATGGAGGAAGTGGTTGTTTGCTTTGGTTCGGTGATCTAGTTGACATGAGAGTATTTCTTCAATGGGGACAAGATCTTTATATCAGAGTCCCTTCTTCAGAATTGGATCATGTTAGGGTTCATGGCAACCGAAACCAGAAGAAGCGATCGATACGGATCCCAGTTGCCGTGATAATTTCTGGATTCCTAATATGTGCCTGCATAATAATATTTATAAAGCGAGTGACACCGAGATTATATCATCTTGCGCCATTTCAATGGAGGCAACAATATTTTAAATTGAAGAAGGAAGATTCTGATCTACCAATATTTGATTTTTCAATCATTGTTAAGGCAACCGATAGTTTTGCTATCAGAAATAAACTCGGGGAAGGTGGATTTGGACCTGTTTATAAGGGTACCCTTATAGATGGAAAAGAGGTAGCCATAAAGCGCAACTCAAAGATGTCTGATCAAGGGTTGGACGAATTTAAAAACGAAATTTTGTTGATTACAAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGTTCTATTCATAGAGAGGAAAAATTGTTGATCTACGAATACATGCCCAACAGGAGCTTAGACTACTTCATCTTTGATGAAACTAGAAGCAAACTCTTGGACTGGTCGAAGCGTTCCCATATTATTGCTGGCATTGCTAGAGGAATTCTTTATCTCCACCAAGATTCTAGACTTAGAATTATTCACAGAGATTTAAAGTTAAGCAATATCTTGCTAGATGCTGATATGAATCCAAAAATCTCAGATTTTGGTCTGGCTCGGACATGTTGTGGCGATCAAGTTGAAGCCAGAACATGCAAATTGGTTGGAACATATGGCTACATGCCTCCAGAGTATGCTATGCATGGCCGTTACTCCGGAAAATCAGATGTGTTTAGTTTTGGGGTAATAGTATTGGAGATAATTAGCGGAAACAAGGTGAAGGTGTTTTATGACTCAGAAAACTCACTCAACCTTCTTGGACATGCATGGAGACTGTGGATTGAAAACATGCCACTGGAACTAGTTGATCCACAATTAATTGAGACAAGCCTTTATTCTGAAATTTTAAGATATATGCATGTGGGATTGTTGTGTGTACAAGAAAAACCAGAAGATAGACCAGACATGTCATCTGTAATTCTAATGCTGAATGGTGAGAAATTATTGTCTCAGCCGAATGCTCCGGGATTTTATACTGGAAGGGGCTTACCTGAACCAATATTGCAATCTTCAAATAAGATGTCAATTACAATTTTAGAAGGAAGATAG 2454 0.3737 MIYRIIKLIILLIFSTYMKKCTSLDTLSENQSILDGQSLISAKGTFELGFFSPGNSKGRYLGIWYKKLTPLTIVWVANRETPLHDNLGVFKLDRNGVLVILNGINNIIWSSNVSNKSANNNSITSQLLDTGNLVLKIGQDDVLWQSFDYPGDTLLPGMKLGWNLLTGLNTFQLCWKSLDDPAKGDHTVNIDMRGFPQLVMTTGSGIGYRMGSWNGRAFTGYPSQPLKLKQRFEFVMTEKEVYHRHEVVDSSIVSIYKLSSSGQCQAFVWINETSDRIVINIGMEDSCDNYATCGANSVCNMRGNVPRCECLKGYVPKFPEQWNISYWSSGCVPKIKSFCGNNNTSGFLKYREMKLPDTSSSWYNKTMNLVECQKVCMKNCSCTAYTNVDIRNGGSGCLLWFGDLVDMRVFLQWGQDLYIRVPSSELDHVRVHGNRNQKKRSIRIPVAVIISGFLICACIIIFIKRVTPRLYHLAPFQWRQQYFKLKKEDSDLPIFDFSIIVKATDSFAIRNKLGEGGFGPVYKGTLIDGKEVAIKRNSKMSDQGLDEFKNEILLITKLQHRNLVKLLGCSIHREEKLLIYEYMPNRSLDYFIFDETRSKLLDWSKRSHIIAGIARGILYLHQDSRLRIIHRDLKLSNILLDADMNPKISDFGLARTCCGDQVEARTCKLVGTYGYMPPEYAMHGRYSGKSDVFSFGVIVLEIISGNKVKVFYDSENSLNLLGHAWRLWIENMPLELVDPQLIETSLYSEILRYMHVGLLCVQEKPEDRPDMSSVILMLNGEKLLSQPNAPGFYTGRGLPEPILQSSNKMSITILEGR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02367 817 SMART ntp_6 342 421 IPR003609 -
Trre16g02367 817 Pfam Protein tyrosine and serine/threonine kinase 509 775 IPR001245 GO:0004672|GO:0006468
Trre16g02367 817 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre16g02367 817 CDD STKc_IRAK 513 780 - -
Trre16g02367 817 Gene3D Transferase(Phosphotransferase) domain 1 583 787 - -
Trre16g02367 817 ProSiteProfiles EGF-like domain profile. 283 320 IPR000742 -
Trre16g02367 817 SMART blect_4 30 150 IPR001480 -
Trre16g02367 817 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Trre16g02367 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Trre16g02367 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 421 - -
Trre16g02367 817 Gene3D - 19 147 IPR036426 -
Trre16g02367 817 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02367 817 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02367 817 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Trre16g02367 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 147 - -
Trre16g02367 817 Gene3D Hepatocyte Growth Factor 339 417 - -
Trre16g02367 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 582 - -
Trre16g02367 817 Pfam PAN-like domain 339 407 IPR003609 -
Trre16g02367 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Trre16g02367 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 768 - -
Trre16g02367 817 Gene3D Phosphorylase Kinase; domain 1 474 582 - -
Trre16g02367 817 SUPERFAMILY Protein kinase-like (PK-like) 490 778 IPR011009 -
Trre16g02367 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Trre16g02367 817 Pfam D-mannose binding lectin 72 176 IPR001480 -
Trre16g02367 817 CDD B_lectin 30 150 IPR001480 -
Trre16g02367 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Trre16g02367 817 CDD PAN_AP_plant 339 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02367 Trre-Chr16 19573762 19577025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02367 436 793 Receptor kinase-like Gene Family AT4G23190 51.630 1.57e-118 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02367 PK_Tyr_Ser-Thr 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02367 - - aprc:113865090 1079.32