Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02366 ATGGCCACTCCACTTTTCATGCCATTTGTTGTAATGTTACTATTGTTTTCCTCCCAAATTTCCTCTGATACAGATATCATAACTCAGTTTCATTCTCTTCATGATGGAACTACTAGAACATTGGTTAATGGAACATTTGAGTTGGGTTTCTTTAGTCCAGGTAGTTCCACAAATCGCTACGTAGGAATATGGTTCAAGAATATCCCTATAAAAACGGTTGTTTGGGTAGCCAATCGTGACCATCCAATTAGTGACAAATCCGGCATATTGAGCATAAACAAAGAAGGAAACCTTGTCCTTTACAGCAAAAATGGCACAACTCATTGGTCAACAAATATAACGACCAAATCGTCAACCTCAAGCTTCATAGCACGGCTCTTAGGTACTGGAAACTTGGTCCTAAATGATGAGAAAGAAAATAACAGTTATGATGTGTACTTGTGGCAGAGCTTTGACTATCCTACCGATACATTTCTACCAGGAATGAAGGTTGGGTGGAACCTAACAAGCGGCCTTAATAGGCGCCTAACAGCTTGGAACAATTGGGACGACCCTTCTTCAGGTCAAATTACTTATGGCGTGATAAGAAGTGACATTCCCGAAACAAGGATTCAAAATGGTTCATCAGTTTTATATAGAAGTGGACCTTATAATGGCCTTCATTTGGGTGCTGCACAAAAATTGAAACATGTTCCATTATTCATTCTCAATTTTAAAACGGATGAGTATTATTTCACTTACCAACCCAGGAATCAGTCGTTACTCTCAAGATTTGTCATCAATCAAACTGTTTCTACTCTTCAGATCTTAACGTGGACTGAAGGGAACCAAACATGGATGGTTCATTCACATATTCCGAGAGATGAATGTGATAACTACAACCGTTGTAGTTCGTTTGGGATTTGTGGCATGATGAGTAAGTCCTCCATGTGCGAGTGCTTAAGTGGATTCACTCCAAAATCACCTCGAAATTGGAATGTGAAGGACTGGAGTCAAGGATGCGTGCGGAGTGAAAATTGGAGCTGTAGAGAGAAAAATAAAGACGGGTTCATCAAATTTCAAAATATGAAGGTCCCGGACACTAAGATATCTTGGATAAATAGAAGTATGACACTTGAGAAATGTAAGACCAAATGTTGGGAGAATTGTTCCTGTACAGCTTATGCTAACTCAAATATCATTGAAGATGGAAGTGGTTGCATCCTCTGGTTCGGTGATCTCTTGGACTTGAGACAATTACCTGATTCTGGGCAAGATCTATATGTTAGATCCCATACCTCGGAAATAGCAAACCGAGATGGTTCACGGAAAATGGTAGCTGTGGTCACAAGTACCACTTCATTAATTATTGTGATGCTTTTGCTATTTATCATACTTCTTTGTTGGAGGAGAAAAGCCAAATCTAAATCTAGAGAGGGAATAGGAAGCATGAAGACTACAATAAAGAAAGGTGAAGGTGAACAACAAGACATGGAGCTACCTTCCTTTGATTTTGGTAGAATAGCATTTGCCACTGATGACTTCTCAAATAATAACAAGCTTGGCGAAGGTGGTTTTGGTCCAGTGTATAGGGGAACATTACCAGATGGACAAGATATCGCAGTTAAAAGGCTTTCACATAGCTCCAAACAAGGAATAAAAGAATTTAAGAATGAGGTTATATTTTGTTCCAAACTCCAACATCGAAACCTAGTTAAAGTCCTTGGGTTTTGCATTGAACAAGGAGAGAAACTACTCATCTATGAATATATGCCCAATAAAAGCTTAGACTTCTTTCTTTTCGATTCATCTCGAAGTAAATTTTTAGACTGGTCTAAGCGGTTTGACATTATCGGCGGTATTGCTAGAGGAATTCTTTACCTTCACCAGGACTCTAGACTAAGGGTCATACATAGAGATTTAAAAGCAGGTAATATTTTATTAGATAATGATATGAGTCCCAAAATTGCTGATTTTGGCCTGGCTCGAATGTGTGGAGGTGACCAGATTCAAGGAAACACAAGTATAGTTGTCGGTACATATGGTTATATGGCACCCGAATATGCAATTGATGGGATATTCTCCATCAAATCAGATGTATACAGCTTCGGAATTTTGTTATTAGAGATTATAAGTGGAAAGAAAAATAAAGGACTTTCCTATTCAAATCACAGTTACAATCTTGTTTCTCATGCATGGAGATTGTGGAAAGAGTGCACCCCAATGGAATTCATCGATACTTGTTTGGAGGAGGGTTCATATATCTCATCTGAAGTTTCAGATGGGAAAGAATCTACTTCTGGACAAGAAATGTACAATTTAACAAATGAAGAATCTGTGTCAATATTGGAACCTAGATAG 2340 0.3842 MATPLFMPFVVMLLLFSSQISSDTDIITQFHSLHDGTTRTLVNGTFELGFFSPGSSTNRYVGIWFKNIPIKTVVWVANRDHPISDKSGILSINKEGNLVLYSKNGTTHWSTNITTKSSTSSFIARLLGTGNLVLNDEKENNSYDVYLWQSFDYPTDTFLPGMKVGWNLTSGLNRRLTAWNNWDDPSSGQITYGVIRSDIPETRIQNGSSVLYRSGPYNGLHLGAAQKLKHVPLFILNFKTDEYYFTYQPRNQSLLSRFVINQTVSTLQILTWTEGNQTWMVHSHIPRDECDNYNRCSSFGICGMMSKSSMCECLSGFTPKSPRNWNVKDWSQGCVRSENWSCREKNKDGFIKFQNMKVPDTKISWINRSMTLEKCKTKCWENCSCTAYANSNIIEDGSGCILWFGDLLDLRQLPDSGQDLYVRSHTSEIANRDGSRKMVAVVTSTTSLIIVMLLLFIILLCWRRKAKSKSREGIGSMKTTIKKGEGEQQDMELPSFDFGRIAFATDDFSNNNKLGEGGFGPVYRGTLPDGQDIAVKRLSHSSKQGIKEFKNEVIFCSKLQHRNLVKVLGFCIEQGEKLLIYEYMPNKSLDFFLFDSSRSKFLDWSKRFDIIGGIARGILYLHQDSRLRVIHRDLKAGNILLDNDMSPKIADFGLARMCGGDQIQGNTSIVVGTYGYMAPEYAIDGIFSIKSDVYSFGILLLEIISGKKNKGLSYSNHSYNLVSHAWRLWKECTPMEFIDTCLEEGSYISSEVSDGKESTSGQEMYNLTNEESVSILEPR 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02366 779 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Trre16g02366 779 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Trre16g02366 779 Gene3D Transferase(Phosphotransferase) domain 1 584 769 - -
Trre16g02366 779 SMART serkin_6 508 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02366 779 ProSiteProfiles Protein kinase domain profile. 508 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02366 779 SMART blect_4 32 154 IPR001480 -
Trre16g02366 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Trre16g02366 779 Gene3D Phosphorylase Kinase; domain 1 470 583 - -
Trre16g02366 779 Gene3D Hepatocyte Growth Factor 341 422 - -
Trre16g02366 779 CDD EGF 289 318 - -
Trre16g02366 779 Pfam S-locus glycoprotein domain 212 321 IPR000858 GO:0048544
Trre16g02366 779 Pfam D-mannose binding lectin 72 179 IPR001480 -
Trre16g02366 779 CDD PAN_AP_plant 341 423 - -
Trre16g02366 779 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 724 - -
Trre16g02366 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Trre16g02366 779 Pfam PAN-like domain 342 410 IPR003609 -
Trre16g02366 779 Pfam Protein tyrosine and serine/threonine kinase 511 711 IPR001245 GO:0004672|GO:0006468
Trre16g02366 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 754 - -
Trre16g02366 779 MobiDBLite consensus disorder prediction 752 773 - -
Trre16g02366 779 CDD B_lectin 32 154 IPR001480 -
Trre16g02366 779 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Trre16g02366 779 PIRSF SRK 1 754 IPR024171 GO:0004674
Trre16g02366 779 Gene3D - 18 151 IPR036426 -
Trre16g02366 779 MobiDBLite consensus disorder prediction 752 779 - -
Trre16g02366 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 185 IPR036426 -
Trre16g02366 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 151 - -
Trre16g02366 779 SMART ntp_6 345 424 IPR003609 -
Trre16g02366 779 SUPERFAMILY Protein kinase-like (PK-like) 491 742 IPR011009 -
Trre16g02366 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02366 Trre-Chr16 19566944 19570692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02366 438 739 Receptor kinase-like Gene Family AT4G23230 56.623 3.43e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02366 PK_Tyr_Ser-Thr 9.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02366 - - gmx:100792537 946.036