Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02362 ATGCTCTTTCCATGTCAACTTCTTTGTAAGCTGAAGGTCTCAACACATGTTCATCACTTGAATCTGGTGCGATTGATTGGATATTGCGTTGAGGGATCACTTTTCATTGTATATGAACATATTGGCAATGGAAACTTGGGTCAATATTTGCATGGAATAGGGAAAAAACCATTACCATGGTCAAGTAGAGTTCAAATTGCTCTAGATTCAGCAAGAGGCCTTGAATATATTTTTCAAATTCAGGATTCACATAAGAGTGTGCCTTTTTTTTTCTCTTTTTCTGACATGCTGCTTTCTTTATGCACTAATTCATAA 315 0.3587 MLFPCQLLCKLKVSTHVHHLNLVRLIGYCVEGSLFIVYEHIGNGNLGQYLHGIGKKPLPWSSRVQIALDSARGLEYIFQIQDSHKSVPFFFSFSDMLLSLCTNS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02362 104 Pfam Protein tyrosine and serine/threonine kinase 8 85 IPR001245 GO:0004672|GO:0006468
Trre16g02362 104 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 79 IPR044812 GO:0019199|GO:0045087
Trre16g02362 104 SUPERFAMILY Protein kinase-like (PK-like) 7 84 IPR011009 -
Trre16g02362 104 Gene3D Transferase(Phosphotransferase) domain 1 6 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02362 Trre-Chr16 19543822 19544618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02362 6 79 Receptor kinase-like Gene Family AT3G21630 75.676 1.15e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre16g02362 PK_Tyr_Ser-Thr 2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02362 - K13429 tpra:123921801 139.043