Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02359 ATGTGTGGTGCTAATTCTATATGTAATATGGATGGTAATGTTCCTAAATGTGAATGCCTGAAAGGTTATGTTCCTAAATTTCCTGAACAATGGAATATATCGTATTGGTCTAGCGGTTGTATTCCAAAAATTATACCGGTTTGTGGAAAGAATAACACAAGTGGATTCTTCAAGTACAGAGAAATGAAATTGCCAGACACTTCTTCATCATGGTATAATACGACTATGAATCTTGTGGAATGTGAGAAGACATGTATGAAAAATTGTTCGTGTACAGCTTATGCAAATCTGGATATCCGAAATGGAGGAAGTGGTTGTCTTCTTTGGTTTGATGATCTGGTTGACATGAGAGTATTCTCTCAATGGGGACAAGAGCTATTTATCAGAGTCCCTTCTTCAGAACTAGACTACCTTAGTGTCGATGCCTTTCGAAGCAAGAAAAAGCAGCTGATGCGGATCATACTTGTCTTGATTACTGTTGGATTTTTCACATGTGCCTGCATAATGATATGTATAAGGAGAGTGGCACAGAGAGGATACCGTCTTGCACCATTTCAAAAGCGGAAACTATATTGTAAATTGAAAAAGGAAGACATGGATCTGCCAATATTTGAACTTTCAGATCTTGTTAAAGCCACTAATAACTTTTCTAGCGTAAATAAAATCGGGGAAGGAGGATTTGGACCAGTGTATAAGGGTACACTCGTAGAAGGGAAGGAGGTAGCCATAAAACGACACTCAAAAGTGTCGGATCAAGGATTGGAAGAGTTTAAAAATGAAATTGTGTTGATTGCAAAACTTCAACACCGTAATCTTGTGAAGCTTCTTGGTTGCTGTAGCCATAAAGATGAAATGTTGTTGATGTATGAATACATGCCCAACAAGAGCTTAGACTACTTTATCTTTGATGAAACGAGAAGCAAGCTCCTGGCTTGGACTCACCGTTCGAACATTATTGTTGGCATTGCTAAAGGACTTCTTTATCTTCACCAAGACTCTAGACTCAGAATTATTCATAGAGATTTGAAAACCAGCAATATCCTGTTAGATGCCCATATGAATCCAAAAATCTCGGATTTTGGCTTGGCTCGGATATTTGGCAGAGAACAAATTGAAGCCAAAACAAGAAAAATGGTTGGGACTTATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTCTATGAAATCAGATGTGTTTAGTTTTGGCGTAATAGTATTGGAGATAATCAGTGGAAAAAAGATCAAGGGCTTTTATGACCCAACAAACTCTCTCAACCTTCTTGGTTATGCTTGGAGACTCTGGATCGAAAACATGCCATTGGATCTACTAGATACACATTTACTTGATATGTGCATTTCTTCCGAAATCATACGATGCATACATGTGGGGCTATTATGCGTACAACAAAAACCCGAAGATAGGCCATGCATGTCCTCTGTCATTCTTATGTTGAATGGTGAGAAATTATTGCCTCAACCGAAGGCTCCTGGATTTTATACCGGTAAGGGTTCAATGGAAACCCCGTCCTCATCCTCAAATCATATGTCACTTACAATTTTTGAGGCAAGATAG 1581 0.3871 MCGANSICNMDGNVPKCECLKGYVPKFPEQWNISYWSSGCIPKIIPVCGKNNTSGFFKYREMKLPDTSSSWYNTTMNLVECEKTCMKNCSCTAYANLDIRNGGSGCLLWFDDLVDMRVFSQWGQELFIRVPSSELDYLSVDAFRSKKKQLMRIILVLITVGFFTCACIMICIRRVAQRGYRLAPFQKRKLYCKLKKEDMDLPIFELSDLVKATNNFSSVNKIGEGGFGPVYKGTLVEGKEVAIKRHSKVSDQGLEEFKNEIVLIAKLQHRNLVKLLGCCSHKDEMLLMYEYMPNKSLDYFIFDETRSKLLAWTHRSNIIVGIAKGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKISDFGLARIFGREQIEAKTRKMVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGKKIKGFYDPTNSLNLLGYAWRLWIENMPLDLLDTHLLDMCISSEIIRCIHVGLLCVQQKPEDRPCMSSVILMLNGEKLLPQPKAPGFYTGKGSMETPSSSSNHMSLTIFEAR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02359 526 CDD PAN_AP_plant 48 131 - -
Trre16g02359 526 MobiDBLite consensus disorder prediction 506 526 - -
Trre16g02359 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Trre16g02359 526 SUPERFAMILY Protein kinase-like (PK-like) 199 499 IPR011009 -
Trre16g02359 526 Gene3D Transferase(Phosphotransferase) domain 1 292 494 - -
Trre16g02359 526 ProSiteProfiles Protein kinase domain profile. 216 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02359 526 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 47 130 - -
Trre16g02359 526 ProSiteProfiles PAN/Apple domain profile. 48 131 IPR003609 -
Trre16g02359 526 MobiDBLite consensus disorder prediction 504 526 - -
Trre16g02359 526 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 182 291 - -
Trre16g02359 526 Pfam PAN-like domain 48 116 IPR003609 -
Trre16g02359 526 Gene3D Hepatocyte Growth Factor 48 125 - -
Trre16g02359 526 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 292 495 - -
Trre16g02359 526 Gene3D Phosphorylase Kinase; domain 1 181 291 - -
Trre16g02359 526 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 510 - -
Trre16g02359 526 Pfam Protein kinase domain 217 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02359 526 CDD STKc_IRAK 222 489 - -
Trre16g02359 526 SMART ntp_6 51 130 IPR003609 -
Trre16g02359 526 SMART serkin_6 216 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02359 Trre-Chr16 19506174 19508618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02359 154 502 Receptor kinase-like Gene Family AT4G23190 54.039 2.76e-127 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02359 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02359 - - gmx:100782811 737.258