Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02358 ATGATTGATAACATAACAGTGTTGTTCTGTTTGTTCTTTTTATGTTCCTATATGAGAACAAGCACTTCACTTGACAGTTTATCAGTGAATCAATCCATCAAAGATGGCGAGACATTAGTTTCGGCTAATGGAACTTTTGAAATGGGTTTCTTCAGTCCTGGAAACTCAAAAGGTAGATATTTGGGTATGTGGTATAAGAAGTTAACCCCTTTAACTGTTTTATGGGTGGCTAATAGGGAAACACCGGTGTACAATAACTCAGGAGTCTTAAAACTCAATGAAAACGGCATTCTTGTCGTTCTCAATGGTGAAAACAACACCACCGTTTGGTCCTCCAACGTATCAAATAAAGTCGTCGTCAATAATACAATAACTGCGCAGTTCTTGGAAACGGGGAATCTTGTGTTGAAAAATGGGAAGGATAATATTGTGTGGCAAAGTTTTGATTATCCAACTGATACATTCATGCCGGGAATGAAGATTGGATGGAACTTAGTAACTGGTCTAAACAAGAATCAAACGTCGTGGAAGAGTGCAGATGATCCTGCAAAGGGAGAATATGTTAGTGCTATTGATCCCAGAGGATATCCTCAAGCAGTTATTTCGAAGGGATCTGTCATAAGATTGAGAATAGGATCATGGAACGGACGCGCTTTTACTGGATATCCGACGCAGCCGTTGAAAGAAAAGCAAAGGTTTGAATTTGTCATAACTGACAAAGAAGTGTATCATAGTTTTGAAGTTATTGATAGCTCTATAATTTGCATATATAAATTGTCCCTTTTAGGAAATTTGCAAGCTTTATGTTGGACAAGTCAATCAAGCTCTAGGATAATTATATACACTGGCGCAGAAGATTCGTGTGATAATTATGCTATGTGTGGTGCTAATTCTATATGTAATATGGATGGTAATGTTCCTAAATGTGAATGCCTGAAAGGTTATGTTCCTAAATTTCCTGAACAATGGAATATATCGTATTGGTCTAGCGGTTGTATTCCAAAAATTATACCGGTTTGTGGAAAGAATAACACAAGTGGATTCTTCAAGTACAGAGAAATGAAATTGCCAGACACTTCTTCATCATGGTATAATACGACTATGAATCTTGTGGAATGTGAGAAGACATGTATGAAAAATTGTTCGTGTACAGCTTATGCAAATCTGGATATCCGAAATGGAGGAAGTGGTTGTCTTCTTTGGTTTGATGATCTGGTTGACATGAGAGTATTCTCTCAATGGGGACAAGAGCTATTTATCAGAGTCCCTTCTTCAGAACTAGACTACCTTAGTGTCGATGCCTTTCGAAGCAAGAAAAAGCAGCTGATGCGGATCATACTTGTCTTGATTACTGTTGGATTTTTCACATGTGCCTGCATAATGATATGTATAAGGAGAGTGGCACAGAGAGGATACCGTCTTGCACCATTTCAAAAGCGGAAACTATATTGTAAATTGAAAAAGGAAGACATGGATCTGCCAATATTTGAACTTTCAGATCTTGTTAAAGCCACTAATAACTTTTCTAGCGTAAATAAAATCGGGGAAGGAGGATTTGGACCAGTGTATAAGGGTACACTCGTAGAAGGGAAGGAGGTAGCCATAAAACGACACTCAAAAGTGTCGGATCAAGGATTGGAAGAGTTTAAAAATGAAATTGTGTTGATTGCAAAACTTCAACACCGTAATCTTGTGAAGCTTCTTGGTTGCTGTAGCCATAAAGATGAAATGTTGTTGATGTATGAATACATGCCCAACAAGAGCTTAGACTACTTTATCTTTGATGAAACGAGAAGCAAGCTCCTGGCTTGGACTCACCGTTCGAACATTATTGTTGGCATTGCTAAAGGACTTCTTTATCTTCACCAAGACTCTAGACTCAGAATTATTCATAGAGATTTGAAAACCAGCAATATCCTGTTAGATGCCCATATGAATCCAAAAATCTCGGATTTTGGCTTGGCTCGGATATTTGGCAGAGAACAAATTGAAGCCAAAACAAGAAAAATGGTTGGGACTTATGGTTACATGCCTCCAGAGTATGCTGTACATGGTCGTTACTCTATGAAATCAGATGTGTTTAGTTTTGGCGTAATAGTATTGGAGATAATCAGTGGAAAAAAGATCAAGGGCTTTTATGACCCAACAAACTCTCTCAACCTTCTTGGTTATGCTTGGAGACTCTGGATCGAAAACATGCCATTGGATCTACTAGATACACATTTACTTGATATGTGCATTTCTTCCGAAATCATACGATGCATACATGTGGGGCTATTATGCGTACAACAAAAACCCGAAGATAGGCCATGCATGTCCTCTGTCATTCTTATGTTGAATGGTGAGAAATTATTGCCTCAACCGAAGGCTCCTGGATTTTATACCGGTAAGGGTTCAATGGAAACCCCGTCCTCATCCTCAAATCATATGTCACTTACAATTTTTGAGGCAAGATAG 2457 0.3838 MIDNITVLFCLFFLCSYMRTSTSLDSLSVNQSIKDGETLVSANGTFEMGFFSPGNSKGRYLGMWYKKLTPLTVLWVANRETPVYNNSGVLKLNENGILVVLNGENNTTVWSSNVSNKVVVNNTITAQFLETGNLVLKNGKDNIVWQSFDYPTDTFMPGMKIGWNLVTGLNKNQTSWKSADDPAKGEYVSAIDPRGYPQAVISKGSVIRLRIGSWNGRAFTGYPTQPLKEKQRFEFVITDKEVYHSFEVIDSSIICIYKLSLLGNLQALCWTSQSSSRIIIYTGAEDSCDNYAMCGANSICNMDGNVPKCECLKGYVPKFPEQWNISYWSSGCIPKIIPVCGKNNTSGFFKYREMKLPDTSSSWYNTTMNLVECEKTCMKNCSCTAYANLDIRNGGSGCLLWFDDLVDMRVFSQWGQELFIRVPSSELDYLSVDAFRSKKKQLMRIILVLITVGFFTCACIMICIRRVAQRGYRLAPFQKRKLYCKLKKEDMDLPIFELSDLVKATNNFSSVNKIGEGGFGPVYKGTLVEGKEVAIKRHSKVSDQGLEEFKNEIVLIAKLQHRNLVKLLGCCSHKDEMLLMYEYMPNKSLDYFIFDETRSKLLAWTHRSNIIVGIAKGLLYLHQDSRLRIIHRDLKTSNILLDAHMNPKISDFGLARIFGREQIEAKTRKMVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGKKIKGFYDPTNSLNLLGYAWRLWIENMPLDLLDTHLLDMCISSEIIRCIHVGLLCVQQKPEDRPCMSSVILMLNGEKLLPQPKAPGFYTGKGSMETPSSSSNHMSLTIFEAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02358 818 SMART serkin_6 508 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02358 818 CDD B_lectin 30 151 IPR001480 -
Trre16g02358 818 Gene3D - 19 148 IPR036426 -
Trre16g02358 818 SMART ntp_6 343 422 IPR003609 -
Trre16g02358 818 Pfam PAN-like domain 340 408 IPR003609 -
Trre16g02358 818 ProSiteProfiles PAN/Apple domain profile. 340 423 IPR003609 -
Trre16g02358 818 Gene3D Phosphorylase Kinase; domain 1 473 583 - -
Trre16g02358 818 Gene3D Transferase(Phosphotransferase) domain 1 584 786 - -
Trre16g02358 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Trre16g02358 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 787 - -
Trre16g02358 818 Pfam Protein kinase domain 509 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02358 818 ProSiteProfiles EGF-like domain profile. 284 321 IPR000742 -
Trre16g02358 818 ProSiteProfiles Bulb-type lectin domain profile. 24 149 IPR001480 -
Trre16g02358 818 SMART blect_4 30 151 IPR001480 -
Trre16g02358 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Trre16g02358 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 148 - -
Trre16g02358 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Trre16g02358 818 ProSiteProfiles Protein kinase domain profile. 508 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02358 818 CDD PAN_AP_plant 340 423 - -
Trre16g02358 818 MobiDBLite consensus disorder prediction 798 818 - -
Trre16g02358 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 769 - -
Trre16g02358 818 CDD STKc_IRAK 514 781 - -
Trre16g02358 818 Gene3D Hepatocyte Growth Factor 340 417 - -
Trre16g02358 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 422 - -
Trre16g02358 818 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Trre16g02358 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 583 - -
Trre16g02358 818 Pfam D-mannose binding lectin 72 177 IPR001480 -
Trre16g02358 818 MobiDBLite consensus disorder prediction 796 818 - -
Trre16g02358 818 SUPERFAMILY Protein kinase-like (PK-like) 491 791 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02358 Trre-Chr16 19506174 19509494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02358 446 794 Receptor kinase-like Gene Family AT4G23190 54.039 1.11e-123 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02358 Pkinase 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02358 - - aprc:113865090 1065.45