Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02354 ATGGTCGAGAAGGAGATTGAAGCCAAGAGACAAGGACTCCCACTCTCTGAGCTAAAAATCACAGTAGCTGATTCATTTAATGATGAGCGCGTGTACTGTGGTAACTGTAAAACGTCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTTTGTTTTCTCTGTTGCTGTGAGCTTCGTCGTGGGCAACTTCTAGGTGGTGCTGATCCATTTGATTTCGAGTTTATTTTCCGAGGGAAAAATTACCTGCATGGTGAAGATGCAAAGGTAATAATCAGAGAGAAAGTATCTCATCATGATGAGATTCGTGAATGGTCAAAATCTAGGTGGTATGCAGATAGTGAAGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTTCCTTGAACTGAGAAGCATATTTCAGCCAAATTGCATCTCTGAGTTAGTATGTAAAGCAAAAGAACTTGCAGAAACAATTAAACTTCAAGAAGCAGAGGAGCCTCTTTTGATAATAGATAGCAGTGGCAAAGGGGAGCCTGTCATTGTCAGCAATGTACTTGAATGTACTTCTGGTTTAAGCTGGGAGCCGCTAGTCATGTGGCGTGCATTTCGTCGGAGAAGGAAGTCCAAGAACAACTCACTTTATGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGTAGATATTAATGTTCACCGATTCTTTACTGGGTACACAAATGGTCGCAAGGATTGGAAGGATTGGCCTCAAGTGTTGAAATTGAAAGATTGGGCTTCTTCTAATTTATTTGAAGAAAGTTTGCTTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATACACAAATCCTTTCAATGGTGCTCTTAACCTTGCTGTGAAGCTGCCTGCTAATGTTCAAAAGCCAGACATGGGACCTAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAGGTGGAACTGGAACCTGCGACCATTGCTGAAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCGGGATGGAGAAACAAATGTTGACAAGGTTGATAATTTGTCCTCTTCCATAAATGCTTCAGATGGAGGGGATTCTTTAGACGGTGCTCTCTGGGATATTTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAGTCGAGGTTATCCACCCTATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAAGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGACGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCAAAAATCTTAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAATTTCCAGTAAACCACAGGTCCGCAGAGGATAAATTGGAGGTGAAGAAAATGGTTATACATGCTATGGTTGATGTAGTCAATAAGTTGGAGGAAACAAGGTCTAAGGAAACGGAAGTTCCATTGTAA 1686 0.4122 MVEKEIEAKRQGLPLSELKITVADSFNDERVYCGNCKTSIFDYHRSCTECSFDLCFLCCCELRRGQLLGGADPFDFEFIFRGKNYLHGEDAKVIIREKVSHHDEIREWSKSRWYADSEGNIPCPKANNECDHGFLELRSIFQPNCISELVCKAKELAETIKLQEAEEPLLIIDSSGKGEPVIVSNVLECTSGLSWEPLVMWRAFRRRRKSKNNSLYDVKAIDCLDWCEVDINVHRFFTGYTNGRKDWKDWPQVLKLKDWASSNLFEESLLRHCAEFISSLPYKEYTNPFNGALNLAVKLPANVQKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELEPATIAEIKKLTQKHLEQDKRELHGHNRDGETNVDKVDNLSSSINASDGGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHVHCSPLVEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVKNLKSCTKVALDFVSPENIGQCFHLTEEFRKFPVNHRSAEDKLEVKKMVIHAMVDVVNKLEETRSKETEVPL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02354 561 SUPERFAMILY Clavaminate synthase-like 177 543 - -
Trre16g02354 561 ProSiteProfiles JmjC domain profile. 288 519 IPR003347 -
Trre16g02354 561 MobiDBLite consensus disorder prediction 369 385 - -
Trre16g02354 561 Pfam JmjC domain, hydroxylase 406 502 IPR003347 -
Trre16g02354 561 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 177 556 IPR045109 GO:0032454|GO:0033169
Trre16g02354 561 SMART cupin_9 269 519 IPR003347 -
Trre16g02354 561 Coils Coil 146 166 - -
Trre16g02354 561 Gene3D Cupin 173 528 - -
Trre16g02354 561 MobiDBLite consensus disorder prediction 369 393 - -
Trre16g02354 561 FunFam Transcription factor jumonji domain-containing protein 160 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02354 Trre-Chr16 19464291 19470398 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre16g02354 JmjC 1.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02354 K15601 - csav:115721711 652.129