Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02353 ATGGTCGAGAAGGAGATTGAAGCCAAGAGACAAGGACTCCCACTCTCTGAGCTAAAAATCACAGTAGCTGATTCATTTAATGATGAGCGCGTGTACTGTGGTAACTGTAAAACGTCAATATTTGACTACCACAGAAGCTGTACAGAATGCTCCTTTGACCTTTGTTTTCTCTGTTGCTGTGAGCTTCGTCGTGGGCAACTTCTAGGTGGTGCTGATCCATTTGATTTCGAGTTTATTTTCCGAGGGAAAAATTACCTGCATGGTGAAGATGCAAAGGTAATAATCAGAGAGAAAGTATCTCATCATGATGAGATTCGTGAATGGTCAAAATCTAGGTGGTATGCAGATAGTGAAGGTAACATTCCCTGTCCAAAAGCCAATAACGAATGTGATCATGGTTTCCTTGAACTGAGAAGCATATTTCAGCCAAATTGCATCTCTGAGTTATCTGTTAGGAACACGGAAGATATACACAATAACACAAGGGAAACAACTTTTCGTGAAGATAGCAGTGGCAAAGGGGAGCCTGTCATTGTCAGCAATGTACTTGAATGTACTTCTGGTTTAAGCTGGGAGCCGCTAGTCATGTGGCGTGCATTTCGTCGGAGAAGGAAGTCCAAGAACAACTCACTTTATGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGTAGATATTAATGTTCACCGATTCTTTACTGGGTACACAAATGGTCGCAAGGATTGGAAGGATTGGCCTCAAGTGTTGAAATTGAAAGATTGGGCTTCTTCTAATTTATTTGAAGAAAGTTTGCTTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATACACAAATCCTTTCAATGGTGCTCTTAACCTTGCTGTGAAGCTGCCTGCTAATGTTCAAAAGCCAGACATGGGACCTAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAGGTGGAACTGGAACCTGCGACCATTGCTGAAATTAAGAAATTGACACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGGTCATAATCGGGATGGAGAAACAAATGTTGACAAGGTTGATAATTTGTCCTCTTCCATAAATGCTTCAGATGGAGGGGATTCTTTAGACGGTGCTCTCTGGGATATTTTCCGGAGAGAAGATGTACCTGTATTGGAGGAATATCTGAATAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAGTCGAGGTTATCCACCCTATACATGATCAGACCTTTTATCTAACCATCAAGCATAAGAAGAGGCTTAAAGAGGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAAACTAGGAGACGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCAAAAATCTTAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGTCAGTGCTTTCATTTGACTGAGGAGTTTCGCAAATTTCCAGTAAACCACAGGTCCGCAGAGGATAAATTGGAGGTGAAGAAAATGGTTATACATGCTATGGTTGATGTAGTCAATAAGTTGGAGGAAACAAGGTCTAAGGAAACGGAAGTTCCATTGTAA 1674 0.414 MVEKEIEAKRQGLPLSELKITVADSFNDERVYCGNCKTSIFDYHRSCTECSFDLCFLCCCELRRGQLLGGADPFDFEFIFRGKNYLHGEDAKVIIREKVSHHDEIREWSKSRWYADSEGNIPCPKANNECDHGFLELRSIFQPNCISELSVRNTEDIHNNTRETTFREDSSGKGEPVIVSNVLECTSGLSWEPLVMWRAFRRRRKSKNNSLYDVKAIDCLDWCEVDINVHRFFTGYTNGRKDWKDWPQVLKLKDWASSNLFEESLLRHCAEFISSLPYKEYTNPFNGALNLAVKLPANVQKPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELEPATIAEIKKLTQKHLEQDKRELHGHNRDGETNVDKVDNLSSSINASDGGDSLDGALWDIFRREDVPVLEEYLNKHFREFRHVHCSPLVEVIHPIHDQTFYLTIKHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVKNLKSCTKVALDFVSPENIGQCFHLTEEFRKFPVNHRSAEDKLEVKKMVIHAMVDVVNKLEETRSKETEVPL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02353 557 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 172 552 IPR045109 GO:0032454|GO:0033169
Trre16g02353 557 SMART cupin_9 265 515 IPR003347 -
Trre16g02353 557 Gene3D Cupin 142 524 - -
Trre16g02353 557 FunFam Transcription factor jumonji domain-containing protein 150 524 - -
Trre16g02353 557 SUPERFAMILY Clavaminate synthase-like 155 539 - -
Trre16g02353 557 MobiDBLite consensus disorder prediction 365 381 - -
Trre16g02353 557 ProSiteProfiles JmjC domain profile. 284 515 IPR003347 -
Trre16g02353 557 Pfam JmjC domain, hydroxylase 402 498 IPR003347 -
Trre16g02353 557 MobiDBLite consensus disorder prediction 365 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02353 Trre-Chr16 19464291 19470398 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre16g02353 JmjC 1.3e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02353 K15601 - csav:115721711 648.662