Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02351 ATGACGCTCGATAAATGCAAGGATAATTGTTTGCAAAATTGTTCCTGCACGGCTTACTCAATCTTAAGCGCAAATGATGGAAACAGCGGATGTTCCATTTGGTTTGATGATCTTAAAGATTTGAGAGTTTCAGAATCTGGACAAGACTTGTATATTCGAGGAGACGTTTCAAATATCGATGATGAACATGGGCGTATGAAAAAAGTAATTGTTGCAGTTTCAATCATTGCTTCATTAGTCATTGTGATGCTATTAGCATTCTACATTTATAGAACAAAGTTTAAAGTTAATGAGGACAAGGTAAACTCAATGTGGATTGATGACAATAGTGAAAGTGAACATGATGATTTTGAGCTTCCTTTCTTTGATCTTGTTACAATACTAGAAGCCACAAATAATTTCTCAATTGACAACAAACTCGGTGAAGGTGGTTTTGGACCGGTATACAAGGGTAAGTTGGTTGATGGCCAAGAAATTGCAGTTAAAAGGCTTTCTTGGGGTTCCGGACAAGGAACAAAAGAATTTAAGAATGAAGTTATATTATGTTCTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAACAAGATGAGAAAATGTTAGTCTATGAATATATGTCAAACACAAGCCTTGATTCATTTATTTTTGATCCAATTCAAAGTAAATCGTTGGATTGGCCATTGCGTTTTGATATCTTATATGGAATTGCACGTGGTCTTCTATATCTACATCAAGATTCAAGATTGAGAATAATACATAGAGATTTGAAAGCAAGCAATATTCTATTAGACAAAGATATGAATTCAAAAATTTCAGATTTTGGCTTGGCTAAAATGTGCGGAGGAGACCAAATTGAAGGAAAGACAAATCGAATAATTGGCACATATGGTTATATGGCACCTGAATATGCCATTGATGGACTATTCTCTATTAAATCAGATGTTTTTAGTTTTGGCGTATTATTGCTAGAACTTATAAGTGGGATGAAAAATAGAACACGTACCTACCATCAGCATGATCAAAATCTTATTGGACATGCATGGAGATTGTGGAAAGAAGGAATGATACACACATTGATTGATGATAATTTGATGGAAACATGCAATTTCAATGAAGCTTTACGGTGCATTCAAATAGGTCTTTTATGTCTACAACATCATCCAGATGATCGACCAAACATGACATCTGTGGTTGTGATGTTAAAAAGTAATAATGCTATACCTCAACCACAAGAGCCAGGTTATTTATTAAAAACTGCACCTATAGAAAGAGAACTTTTTTCTTCTGATGGAGAAACATCATCTTCAATAAATCAAGTAACTATTTCAATATTAGATGTTAGATAG 1359 0.3377 MTLDKCKDNCLQNCSCTAYSILSANDGNSGCSIWFDDLKDLRVSESGQDLYIRGDVSNIDDEHGRMKKVIVAVSIIASLVIVMLLAFYIYRTKFKVNEDKVNSMWIDDNSESEHDDFELPFFDLVTILEATNNFSIDNKLGEGGFGPVYKGKLVDGQEIAVKRLSWGSGQGTKEFKNEVILCSKLQHRNLVKVIGCCIEQDEKMLVYEYMSNTSLDSFIFDPIQSKSLDWPLRFDILYGIARGLLYLHQDSRLRIIHRDLKASNILLDKDMNSKISDFGLAKMCGGDQIEGKTNRIIGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLELISGMKNRTRTYHQHDQNLIGHAWRLWKEGMIHTLIDDNLMETCNFNEALRCIQIGLLCLQHHPDDRPNMTSVVVMLKSNNAIPQPQEPGYLLKTAPIERELFSSDGETSSSINQVTISILDVR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02351 452 ProSiteProfiles PAN/Apple domain profile. 1 55 IPR003609 -
Trre16g02351 452 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 429 - -
Trre16g02351 452 CDD PAN_AP_plant 1 53 - -
Trre16g02351 452 SMART serkin_6 134 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02351 452 CDD STKc_IRAK 140 406 - -
Trre16g02351 452 ProSiteProfiles Protein kinase domain profile. 134 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02351 452 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 98 209 - -
Trre16g02351 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Trre16g02351 452 Gene3D Transferase(Phosphotransferase) domain 1 210 416 - -
Trre16g02351 452 Pfam Protein tyrosine and serine/threonine kinase 135 404 IPR001245 GO:0004672|GO:0006468
Trre16g02351 452 SUPERFAMILY Protein kinase-like (PK-like) 117 420 IPR011009 -
Trre16g02351 452 Pfam Domain of unknown function (DUF3403) 410 452 IPR021820 GO:0004674
Trre16g02351 452 Gene3D Phosphorylase Kinase; domain 1 95 209 - -
Trre16g02351 452 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 210 413 - -
Trre16g02351 452 Pfam PAN-like domain 1 40 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02351 Trre-Chr16 19452334 19454142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02351 60 430 Receptor kinase-like Gene Family AT4G23190 49.340 1.41e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02351 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02351 - - gmx:100790436 627.091