Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02350 ATGACGCTCGATAAATGCAAGGATAATTGTTTGCAAAATTGTTCCTGCACGGCTTACTCAATCTTAAGCGCAAATGATGGAAACAGCGGATGTTCCATTTGGTTTGATGATCTTAAAGATTTGAGAGTTTCAGAATCTGGACAAGACTTGTATATTCGAGGAGACGTTTCAAATATCGATGATGAACATGGGCGTATGAAAAAAGTAATTGTTGCAGTTTCAATCATTGCTTCATTAGTCATTGTGATGCTATTAGCATTCTACATTTATAGAACAAAGTTTAAAGTTAATGAGGACAAGGTAAACTCAATGTGGATTGATGACAATAGTGAAAGTGAACATGATGATTTTGAGCTTCCTTTCTTTGATCTTGTTACAATACTAGAAGCCACAAATAATTTCTCAATTGACAACAAACTCGGTGAAGGTGGTTTTGGACCGGTATACAAGGGTAAGTTGGTTGATGGCCAAGAAATTGCAGTTAAAAGGCTTTCTTGGGGTTCCGGACAAGGAACAAAAGAATTTAAGAATGAAGTTATATTATGTTCTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAACAAGATGAGAAAATGTTAGTCTATGAATATATGTCAAACACAAGCCTTGATTCATTTATTTTTGATTTTGGCTTGGCTAAAATGTGCGGAGGAGACCAAATTGAAGGAAAGACAAATCGAATAATTGGCACATATGGTTATATGGCACCTGAATATGCCATTGATGGACTATTCTCTATTAAATCAGATGTTTTTAGTTTTGGCGTATTATTGCTAGAACTTATAAGTGGGATGAAAAATAGAACACGTACCTACCATCAGCATGATCAAAATCTTATTGGACATGCATGGAGATTGTGGAAAGAAGGAATGATACACACATTGATTGATGATAATTTGATGGAAACATGCAATTTCAATGAAGCTTTACGGTGCATTCAAATAGGTCTTTTATGTCTACAACATCATCCAGATGATCGACCAAACATGACATCTGTGGTTGTGATGTTAAAAAGTAATAATGCTATACCTCAACCACAAGAGCCAGGTTATTTATTAAAAACTGCACCTATAGAAAGAGAACTTTTTTCTTCTGATGGAGAAACATCATCTTCAATAAATCAAGTAACTATTTCAATATTAGATGTTAGATAG 1191 0.3426 MTLDKCKDNCLQNCSCTAYSILSANDGNSGCSIWFDDLKDLRVSESGQDLYIRGDVSNIDDEHGRMKKVIVAVSIIASLVIVMLLAFYIYRTKFKVNEDKVNSMWIDDNSESEHDDFELPFFDLVTILEATNNFSIDNKLGEGGFGPVYKGKLVDGQEIAVKRLSWGSGQGTKEFKNEVILCSKLQHRNLVKVIGCCIEQDEKMLVYEYMSNTSLDSFIFDFGLAKMCGGDQIEGKTNRIIGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLELISGMKNRTRTYHQHDQNLIGHAWRLWKEGMIHTLIDDNLMETCNFNEALRCIQIGLLCLQHHPDDRPNMTSVVVMLKSNNAIPQPQEPGYLLKTAPIERELFSSDGETSSSINQVTISILDVR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02350 396 Gene3D Phosphorylase Kinase; domain 1 95 209 - -
Trre16g02350 396 ProSiteProfiles PAN/Apple domain profile. 1 55 IPR003609 -
Trre16g02350 396 Pfam Domain of unknown function (DUF3403) 354 396 IPR021820 GO:0004674
Trre16g02350 396 CDD PAN_AP_plant 1 53 - -
Trre16g02350 396 ProSiteProfiles Protein kinase domain profile. 134 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02350 396 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 220 - -
Trre16g02350 396 Pfam Protein tyrosine and serine/threonine kinase 135 219 IPR001245 GO:0004672|GO:0006468
Trre16g02350 396 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 98 209 - -
Trre16g02350 396 Gene3D Transferase(Phosphotransferase) domain 1 218 362 - -
Trre16g02350 396 Pfam PAN-like domain 1 40 IPR003609 -
Trre16g02350 396 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 229 354 - -
Trre16g02350 396 SUPERFAMILY Protein kinase-like (PK-like) 117 364 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02350 Trre-Chr16 19452334 19454142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02350 80 372 Receptor kinase-like Gene Family AT3G45860 39.496 7.23e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02350 PK_Tyr_Ser-Thr 2.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02350 - - tpra:123915292 498.819