Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02349 ATGACGCTCGATAAATGCAAGGATAATTGTTTGCAAAATTGTTCCTGCACGGCTTACTCAATCTTAAGCGCAAATGATGGAAACAGCGGATGTTCCATTTGGTTTGATGATCTTAAAGATTTGAGAGTTTCAGAATCTGGACAAGACTTGTATATTCGAGGAGACGTTTCAAATATCGATGATGAACATGGGCGTATGAAAAAAGTAATTGTTGCAGTTTCAATCATTGCTTCATTAGTCATTGTGATGCTATTAGCATTCTACATTTATAGAACAAAGTTTAAAGTTAATGAGGACAAGGTAAACTCAATGTGGATTGATGACAATAGTGAAAGTGAACATGATGATTTTGAGCTTCCTTTCTTTGATCTTGTTACAATACTAGAAGCCACAAATAATTTCTCAATTGACAACAAACTCGGTGAAGGTGGTTTTGGACCGGGTAAGTTGGTTGATGGCCAAGAAATTGCAGTTAAAAGGCTTTCTTGGGGTTCCGGACAAGGAACAAAAGAATTTAAGAATGAAGTTATATTATGTTCTAAACTTCAACATCGAAATCTTGTTAAAGTTATTGGTTGTTGCATTGAACAAGATGAGAAAATGTTAGTCTATGAATATATGTCAAACACAAGCCTTGATTCATTTATTTTTGATTTTGGCTTGGCTAAAATGTGCGGAGGAGACCAAATTGAAGGAAAGACAAATCGAATAATTGGCACATATGGTTATATGGCACCTGAATATGCCATTGATGGACTATTCTCTATTAAATCAGATGTTTTTAGTTTTGGCGTATTATTGCTAGAACTTATAAGTGGGATGAAAAATAGAACACGTACCTACCATCAGCATGATCAAAATCTTATTGGACATGCATGGAGATTGTGGAAAGAAGGAATGATACACACATTGATTGATGATAATTTGATGGAAACATGCAATTTCAATGAAGCTTTACGGTGCATTCAAATAGGTCTTTTATGTCTACAACATCATCCAGATGATCGACCAAACATGACATCTGTGGTTGTGATGTTAAAAAGTAATAATGCTATACCTCAACCACAAGAGCCAGGTTATTTATTAAAAACTGCACCTATAGAAAGAGAACTTTTTTCTTCTGATGGAGAAACATCATCTTCAATAAATCAAGTAACTATTTCAATATTAGATGTTAGATAG 1182 0.3426 MTLDKCKDNCLQNCSCTAYSILSANDGNSGCSIWFDDLKDLRVSESGQDLYIRGDVSNIDDEHGRMKKVIVAVSIIASLVIVMLLAFYIYRTKFKVNEDKVNSMWIDDNSESEHDDFELPFFDLVTILEATNNFSIDNKLGEGGFGPGKLVDGQEIAVKRLSWGSGQGTKEFKNEVILCSKLQHRNLVKVIGCCIEQDEKMLVYEYMSNTSLDSFIFDFGLAKMCGGDQIEGKTNRIIGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLELISGMKNRTRTYHQHDQNLIGHAWRLWKEGMIHTLIDDNLMETCNFNEALRCIQIGLLCLQHHPDDRPNMTSVVVMLKSNNAIPQPQEPGYLLKTAPIERELFSSDGETSSSINQVTISILDVR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02349 393 ProSiteProfiles PAN/Apple domain profile. 1 55 IPR003609 -
Trre16g02349 393 CDD PAN_AP_plant 1 53 - -
Trre16g02349 393 ProSiteProfiles Protein kinase domain profile. 35 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02349 393 SUPERFAMILY Protein kinase-like (PK-like) 117 361 IPR011009 -
Trre16g02349 393 Gene3D Phosphorylase Kinase; domain 1 108 206 - -
Trre16g02349 393 Pfam Protein tyrosine and serine/threonine kinase 216 345 IPR001245 GO:0004672|GO:0006468
Trre16g02349 393 Gene3D Transferase(Phosphotransferase) domain 1 215 361 - -
Trre16g02349 393 Pfam PAN-like domain 1 40 IPR003609 -
Trre16g02349 393 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 217 - -
Trre16g02349 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 98 206 - -
Trre16g02349 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 226 351 - -
Trre16g02349 393 Pfam Domain of unknown function (DUF3403) 351 393 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02349 Trre-Chr16 19452334 19454142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02349 80 369 Receptor kinase-like Gene Family AT3G45860 38.655 1.33e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02349 PK_Tyr_Ser-Thr 1.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02349 - - tpra:123915292 487.263