Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02348 ATGTATTGCAATATCAATGGATATTTTAATCTTTCCTTGTTAATCATTGTTTCATGTTTACTTATACCTTACCTCAAATTTTCCATAGCAACAGATACTATTCAACTCTCCCAGTCCTTCACTGTTGGCATGACCTTGGTTTCCCAACGTGAAAAGTTTGTACTTGGTTTCTTCACTCCTGAAAATTCCAACAAAAGTTACTTAGGAATTTGGTACAAGAATATCCCAATTCAAACAATTGTTTGGGTTGCAAATGGTGCCAAACCCATAAATGATTCCTCCTCTAGTATCCTAACACTAAACAACACTGGCAACCTTGTCCTCAAACAACATGACAAAGTAGTTTGGTATACAACATCTCAACAAGATTCCCTGAATCCAGTTGCACAACTTCTGGATTCAGGGAATCTTGTGATAAGAGACGAGAAGGAAACAAACTCAGAAGCCTATTTGTGGCAGAGTTTTGATCACCCTAGTGATACAATACTTCCAGGGATGAAGTTGGGTTGGAATCTTATAACTCATACGGAAACGAGAATGACATCTTGGAAAAGTCCGGACGATCCATCACCTGGAAACTTCTATTGGGGTTCATTGCTTTATAATTATCCTGAACAATATTTGATGCAAGGAACAAAGAAATATGTAAGAGTTGGACCATGGAATGGATTGCATTTTAGTGGTATACCAGGTCAAAAGCCAAACCACATTTATGTTACCAACCATGTGTCTAATAAGGATGGGATGTATACTATTTATACTTTGAAGAACGATTCTGTCATTTCAAGAGTGGTAATGAATCAAACCACTTTTAGCTATACTCGATACGTGTGGATGGAATATCAAAAAATTTGGAAAGTTCTTAAATCACTACCTAAAGACTTGTGTGACTTTTATGGAACCTGTGGAGCTTATGGTACTTGCATGATCACAGGTTCACAAATGTGTGAATGTTTATCAGGTTTTAGCCCCAAGTCTCCAGATGCTTGGAACTCAATTGATTGGAGTCAAGGATGTGTCCGAAATAAACCGTTAAACTGTAGGAACAAACTCAAGGATGGATTTGTGAAAGTGAAAGGTCTAAAAGTGTCAGATTGTACACATACTTGGGTAGATCAAACCATAAGTCTTCATGAATGTAGAGTGAAGTGCTTGAATAATTGTTCTTGTATGGCTTATACTAATACAAACATATCAGGAGAAGGCAGTGGCTGTGTCATGTGGTTTGGTGATTTAAATGATATTAGGAAATTTGATGATGATGGACAGGATCTTTATATTAGAATGGATGCTTCTGAATTTGGCAAAGGTAAGGATGAATTTTTCATGATTGTTGTCAACATTGTTAGACATGATGGGCTCAAGAATGATCTGATAAGAATACTTCCTAGCACCATTATAGTTTTTGGGATACTTTGTCTTGGATATCGCCGCTACATATTGCGGAGGAGAAGAATAACTGAGGATTCAGAAGTTATTGATATGGAAGGTGACAAAGGTAGTGAGGACGAGGATGATCTCGATCTCCCATTGCTTGCGTATTCAACCTTAGTCACTGCCACTAATAACTTCTCGATAAAGAACAAGATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAAGATTGGTATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGTGACTCTGGACAAGGAATTACTGAGTTAAAGAATGAAGTAAAGCTTATAGCAAAAGTTCAACACAGGAATCTTGTTAAACTTATTGGATGTTGCATCGAGGAAGAAGAAAGAACGCTAGTTTATGAATACATGAAAAACCGTAGCTTGAATCGGTTTATTTTTGATGATACTAAAAGAAAACTTCTAGATTGGCCTAAGCGCATCAACATTATTAGCGGAATTGCTCGAGATTTTGGTATAGCTAGAATTTTCGGATTAGATCAAACACATGGAAATACCAAGCGAGTTGTTGGAACATATGGCTACATGGCACCAGAATATGCTGTTGATGGACTTTTTTCTGTGAAATCTGATGTGTTCAGCCTTGGAATTTTGATGCTGGAGATTATATGTGGGAAGAGAAATAGAGGTTTTTATGTCGAAAATGAATCTCCTAACCTTGTCACCCATGCATGGAGTTTATGGAAAGAGGGAAGGGCTTTAGAACTAATTGACAAAAACATAGAGGACTCTTGTGTTGAATCAGAGGTATTGCGTTGCATTCATATCAGTCTCTTGTGTGTCCAACAAATGCCAGAGGATAGGCCTGTTATGCCTTCAGTTGTTCTAATGTTGGGGAGTGACGGTGAATTTTCTAAGCCAAAACAGCCCGGTTACTATGTAAAGAAGGATTCATTTGCAGATTGTTCCAACTTAGGTCGAAGTGAAAAGATCATGACTAACGATATGACCATCACCTTATTAGAAGCACGGTGA 2424 0.3783 MYCNINGYFNLSLLIIVSCLLIPYLKFSIATDTIQLSQSFTVGMTLVSQREKFVLGFFTPENSNKSYLGIWYKNIPIQTIVWVANGAKPINDSSSSILTLNNTGNLVLKQHDKVVWYTTSQQDSLNPVAQLLDSGNLVIRDEKETNSEAYLWQSFDHPSDTILPGMKLGWNLITHTETRMTSWKSPDDPSPGNFYWGSLLYNYPEQYLMQGTKKYVRVGPWNGLHFSGIPGQKPNHIYVTNHVSNKDGMYTIYTLKNDSVISRVVMNQTTFSYTRYVWMEYQKIWKVLKSLPKDLCDFYGTCGAYGTCMITGSQMCECLSGFSPKSPDAWNSIDWSQGCVRNKPLNCRNKLKDGFVKVKGLKVSDCTHTWVDQTISLHECRVKCLNNCSCMAYTNTNISGEGSGCVMWFGDLNDIRKFDDDGQDLYIRMDASEFGKGKDEFFMIVVNIVRHDGLKNDLIRILPSTIIVFGILCLGYRRYILRRRRITEDSEVIDMEGDKGSEDEDDLDLPLLAYSTLVTATNNFSIKNKIGEGGFGPVYKGRLVCGQEIAVKRLSSDSGQGITELKNEVKLIAKVQHRNLVKLIGCCIEEEERTLVYEYMKNRSLNRFIFDDTKRKLLDWPKRINIISGIARDFGIARIFGLDQTHGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSLGILMLEIICGKRNRGFYVENESPNLVTHAWSLWKEGRALELIDKNIEDSCVESEVLRCIHISLLCVQQMPEDRPVMPSVVLMLGSDGEFSKPKQPGYYVKKDSFADCSNLGRSEKIMTNDMTITLLEAR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02348 807 PIRSF SRK 4 632 IPR024171 GO:0004674
Trre16g02348 807 PIRSF SRK 633 807 IPR024171 GO:0004674
Trre16g02348 807 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Trre16g02348 807 Pfam Protein tyrosine and serine/threonine kinase 525 631 IPR001245 GO:0004672|GO:0006468
Trre16g02348 807 Pfam Protein tyrosine and serine/threonine kinase 633 758 IPR001245 GO:0004672|GO:0006468
Trre16g02348 807 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Trre16g02348 807 SUPERFAMILY Protein kinase-like (PK-like) 508 759 IPR011009 -
Trre16g02348 807 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Trre16g02348 807 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Trre16g02348 807 SMART blect_4 37 158 IPR001480 -
Trre16g02348 807 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 752 - -
Trre16g02348 807 CDD B_lectin 37 158 IPR001480 -
Trre16g02348 807 Pfam D-mannose binding lectin 79 184 IPR001480 -
Trre16g02348 807 SMART ntp_6 350 429 IPR003609 -
Trre16g02348 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 599 - -
Trre16g02348 807 Pfam PAN-like domain 347 415 IPR003609 -
Trre16g02348 807 ProSiteProfiles Protein kinase domain profile. 524 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02348 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 640 766 - -
Trre16g02348 807 CDD PAN_AP_plant 344 428 - -
Trre16g02348 807 Gene3D - 26 155 IPR036426 -
Trre16g02348 807 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Trre16g02348 807 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 155 - -
Trre16g02348 807 Gene3D Transferase(Phosphotransferase) domain 1 635 772 - -
Trre16g02348 807 Gene3D Transferase(Phosphotransferase) domain 1 510 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02348 Trre-Chr16 19446528 19449743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02348 456 778 Receptor kinase-like Gene Family AT4G23230 46.927 4.99e-98 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g02348 PK_Tyr_Ser-Thr 1.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02348 - - gmx:100775648 1116.68