Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02343 ATGGCTGAAGAACAATTTCAAGCAAGTGGAAATTGGTGGGAGACTCCAGCTAGAAACATGAGGTATGAAAGTGTTGAACAACAACAACAACAACAACAACAATCTTCTTCCTTTGGTGGTTGGCAACAACAACAACATCATGATACTACTCAAAAGCTTCAACCTTCAGATTCTTCAACTTCAAACAATGACTCCAACTTGCATATGATGGGTTTAGGACTTTCATCTCAAACCATTGATTGGAATCAAGCATCTTTATTAAGAAATGAGAAGGCTTCAGAGGGAAGTTTCAGGTCTATGCTTCAAGAAAATTTGAACACATCAAGCACAAATTTTGAGCAAGAAACTGGTGGATTATCTCATCAAGTTAATTGGAGACAAGAAAAGTTATTCTCAAATGAATCTTCAAGCAATGAATTCAAGCAAGTGAATAGAGGTTTCTCTTTAGATCAAACACAATTTAGTCCTCAATATAGTTCTGGAGATAGTAACATGATAAGCCAAATGGATTCTTCAGCTTTATATGGTAACTCTTCAATTTTACAAGGACTATTAGGAAATGAAACTAATCAAATTCAATCTCAACATGGTAATTCATTTGAGAATAGATCAATGAATTTTCCATACTCAACAACAAGCTATTGTTTGAGTACTAATGAGTTAATGCCTTCTTGGTCTAAAGTACCTCATCAAAAACAACAACAAAATAACCAATTGCATTTCACCAATAATGCTCCCTTTTGGAATGCTTCTGAGACTACTATTAAGGATGCTTCATCTAGCTTCTTGCCCCCATTTTCCACACCAAATTTTAGTGCACAAACAAAGAATATATCTGAAGGTAGGGACTCAAGTAGTGTGGTTAAAAAAAGTGTGAGTGAGCCTGCACCTAAAAGGTCCAGAAATGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAAATGGGTGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTTTTGAGCACCCCATATATGAAAAGTGGAGCTCCAATACAACATCAACAGAGTTCTGGTAAATCTAAAGAAGCTGAGGGTCCAAAGCAGGATCTTAGAAGCAGAGGATTATGCTTAGTACCAATTTCTAGTACATTTCCAATGACTCATGAGCCCACAGTTGAATATTGGACACCAACATTTGGAGGAACTTTCAGATAA 1269 0.3696 MAEEQFQASGNWWETPARNMRYESVEQQQQQQQQSSSFGGWQQQQHHDTTQKLQPSDSSTSNNDSNLHMMGLGLSSQTIDWNQASLLRNEKASEGSFRSMLQENLNTSSTNFEQETGGLSHQVNWRQEKLFSNESSSNEFKQVNRGFSLDQTQFSPQYSSGDSNMISQMDSSALYGNSSILQGLLGNETNQIQSQHGNSFENRSMNFPYSTTSYCLSTNELMPSWSKVPHQKQQQNNQLHFTNNAPFWNASETTIKDASSSFLPPFSTPNFSAQTKNISEGRDSSSVVKKSVSEPAPKRSRNETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKEAEGPKQDLRSRGLCLVPISSTFPMTHEPTVEYWTPTFGGTFR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02343 422 Gene3D - 312 374 IPR036638 GO:0046983
Trre16g02343 422 CDD bHLH_AtbHLH_like 308 359 IPR045239 -
Trre16g02343 422 MobiDBLite consensus disorder prediction 273 312 - -
Trre16g02343 422 MobiDBLite consensus disorder prediction 273 291 - -
Trre16g02343 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 351 IPR011598 GO:0046983
Trre16g02343 422 MobiDBLite consensus disorder prediction 366 390 - -
Trre16g02343 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 104 403 - -
Trre16g02343 422 MobiDBLite consensus disorder prediction 1 70 - -
Trre16g02343 422 FunFam Transcription factor bHLH123 family 312 374 - -
Trre16g02343 422 MobiDBLite consensus disorder prediction 21 70 - -
Trre16g02343 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 369 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02343 Trre-Chr16 19414663 19418276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02343 88 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.814 1.33e-76 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02343 - - gmx:100778697 553.903