Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02340 ATGGATCTTCTGTGCGACGCTTATTCAAATTCCTCAGATGAAGAAGAAGAAGAAAAACCTAAGCGACAGAAATTTTCCCACACTTTCTCAAACCCACCAAAACCCTATCTCCCTTCTCCTTCTTCTTCTTCTACCAACCTCCATACACAATCTCTCATTCCAGGTAGCTACGTTTCCAAACGACAACGCGCATCTATGGCTTCCATCTCTACTCCCCACTCTGTTCCCCTTTCATCATCTTCGTTTACACTATCTGGTAGTATCTCGGATGCTGATATACCCCATACCGTTGTAGCATTGTTGAAAAGTAAAGCAAATTGTCATCAAAACCTTAACTTGGTACCTGACAAGCTGTCTGCAACTCTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGACAATACCGTTTGTATATGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGCACGCTAAACTTCCACAATGCTGCAGTGAAAGATGTAAAGTGGTCTCAACAACGGCACTTCCTGCTTTCTTGTGGATACGATAGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACTCAGGTTTTCCGAGAAGACCAAACGGTTGGAGTTATAAAATTCCACCCAGACAATTCAAATCTCTTCCTTTCTGGGGGATCAAAGGGACATATCAAACTATGGGATATCAGAACTGGAAAAGTTGTGCATGACTACAATCGAAATTTAGGCTCTATTCTAGATGTTGAGTTTATAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATATAAGTGAGAATTCGATTATCGTTTGGGATGTGTCCAGACAGGTACCGTTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGTCCCTGTGTTAGACGACACCCCTTTGATCCAGTTTTTGTTGCGCAGTCAAACGGGAATTATATTGCAATCTTTAGTACAACCTCGCCATACAGACTGAACAAATATAAGAGATATGAGAACCATGGAGTTTCTGGGTTCCCAATTAAGTGCAATTTCAGCTTGGATGGGAAGAAGCTTGCTTCTGGCTCTTCAGATGGATCTATTTACCTTTATGATTATCAATCCTCCAAAGTTTTGAAGAAAATAAAGGCCTTTGATCAAGCATGCTTGGACATTGCCTTTCACCCAGTTATGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAG 1272 0.4119 MDLLCDAYSNSSDEEEEEKPKRQKFSHTFSNPPKPYLPSPSSSSTNLHTQSLIPGSYVSKRQRASMASISTPHSVPLSSSSFTLSGSISDADIPHTVVALLKSKANCHQNLNLVPDKLSATLSGHTRAVNAIHWSSTHAHLLASAGMDNTVCIWNVWSRDKKKACTLNFHNAAVKDVKWSQQRHFLLSCGYDSTSRLVDVEKGMETQVFREDQTVGVIKFHPDNSNLFLSGGSKGHIKLWDIRTGKVVHDYNRNLGSILDVEFIMNGKQFISSSDVSGSNISENSIIVWDVSRQVPLSNQVYVEAYTCPCVRRHPFDPVFVAQSNGNYIAIFSTTSPYRLNKYKRYENHGVSGFPIKCNFSLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFDQACLDIAFHPVMPNVIASCSWDGSILVFE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02340 423 Gene3D - 100 423 IPR015943 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 389 IPR001680 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 250 IPR001680 GO:0005515
Trre16g02340 423 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 423 - -
Trre16g02340 423 SMART WD40_4 115 155 IPR001680 GO:0005515
Trre16g02340 423 SMART WD40_4 160 199 IPR001680 GO:0005515
Trre16g02340 423 SMART WD40_4 341 380 IPR001680 GO:0005515
Trre16g02340 423 SMART WD40_4 244 290 IPR001680 GO:0005515
Trre16g02340 423 SMART WD40_4 383 423 IPR001680 GO:0005515
Trre16g02340 423 SMART WD40_4 202 241 IPR001680 GO:0005515
Trre16g02340 423 ProSitePatterns Trp-Asp (WD) repeats signature. 142 156 IPR019775 -
Trre16g02340 423 Pfam WD domain, G-beta repeat 166 197 IPR001680 GO:0005515
Trre16g02340 423 Pfam WD domain, G-beta repeat 348 380 IPR001680 GO:0005515
Trre16g02340 423 Pfam WD domain, G-beta repeat 118 155 IPR001680 GO:0005515
Trre16g02340 423 Pfam WD domain, G-beta repeat 218 241 IPR001680 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 156 IPR001680 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 167 208 IPR001680 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 156 - -
Trre16g02340 423 MobiDBLite consensus disorder prediction 1 50 - -
Trre16g02340 423 SUPERFAMILY WD40 repeat-like 112 422 IPR036322 GO:0005515
Trre16g02340 423 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02340 Trre-Chr16 19373086 19387076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02340 117 379 U-box Gene Family AT1G04510 23.827 2.47e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02340 K24742 - gmx:100790592 652.514