Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02332 ATGGGCGATCATGTGGTGTTGTTTGTTGACCGTTTGGTTCGGCCTATGCCGGTTGAGCCATTGACTCAACATCCGGCCGAACCTGCTCCTGAACCGTTGCCTCCGGTGATCGAGACACCGGCGGGACCTTCCGGTTCTTTACCGGAAAATTATGATGATGACGACGAAGACGGAGAGGATGAGCCGCTATTGCAGATGGCGGAGTGTCGGATTTGTCAGGATGATGATAGCATTAATAATTTGGAGAATCCATGCGCCTGTAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGTGTCCAACGCTGGTGCAACGAAAAAGGAGATACAACCTGTGAAATATGTCATAAGTCCTATGAACCTGGTTATACTGCTCCACCACCGCGTCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCACGCCTTTGGACTTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTTGAAGCTGAATATGATGGATATGCCGCTTCTAATGCCAATGGAGCTGCATTTTGCCGTTCTGCTGCTCTAATTTTAATGGCCCTTTTACTCTTGAGGCACGCGCTTTCTGTCACAGATGTTGATGCCGAAGATGATCCATCAACTTTTTTCTCTCTTTTCTTGCTTCGAGCCGCTGGTTTTCTGTTACCTTGCTATATCATGGCTTGGGCGATCAGTATTTTGCAACGAAGGCGACAAAGACAAGAGGCTGCGGCACTAGCGGCAACCCAAGTTGCCTTCGTGCTACAATCCGGGCAGCATAGAGGTCTGCAATTCGCCATAGCTCCCGCACAAACTGTGAATCCTTACCCACACCAGGAACAAGTTTAG 864 0.4884 MGDHVVLFVDRLVRPMPVEPLTQHPAEPAPEPLPPVIETPAGPSGSLPENYDDDDEDGEDEPLLQMAECRICQDDDSINNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPGYTAPPPRPEETTIDIGGGWTISGTPLDLHDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDVDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPAQTVNPYPHQEQV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02332 287 MobiDBLite consensus disorder prediction 19 60 - -
Trre16g02332 287 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Trre16g02332 287 SMART ringv_2 68 115 IPR011016 GO:0008270
Trre16g02332 287 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 246 IPR033275 -
Trre16g02332 287 MobiDBLite consensus disorder prediction 21 41 - -
Trre16g02332 287 Pfam Protein of unknown function (DUF3675) 120 236 IPR022143 -
Trre16g02332 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 123 IPR013083 -
Trre16g02332 287 FunFam RING/FYVE/PHD zinc finger protein 57 125 - -
Trre16g02332 287 SUPERFAMILY RING/U-box 67 119 - -
Trre16g02332 287 CDD RING_CH-C4HC3_MARCH 69 115 - -
Trre16g02332 287 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02332 Trre-Chr16 19243169 19245775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02332 68 115 C3H Transcription Factor Family AT2G37950 41.176 1.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02332 - - ahf:112734090 429.098