Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02331 ATGGACATGACTTCAAGAAACATAGATGCAGATTCTCAAACACCACAATCAAAACAACAACAAAACAATAATAATAATAATATAACACCAACAACAACCTTAAAGTCTTGTTCACCTTTCACAAACGGAACACATAAACGCCACTATACAACAACTACTACTACTCCACCACCGCCACAACCACTTTCTTCTATGAGTTTTTCTTACAAAGAATGTCTCAAGAATCATGCTGCTTCATTAGGTGGACATGCTCTTGATGGTTGTGGTGAATTCATGCCATCATCATCTATTAATCCTAATGACCCTAGATCCCTTAAATGTGCTGCTTGTGGTTGCCACCGTAATTTCCACCGCCGTGAACCACAAGAACATATCATTACCACCACTAGCACCACCGCTGCAACAACCACCACTGCCGCCACCACCACCACCAACAATAACAATACTTATCTTAGCTGCATCTACACAACCCCATCAACAACAGTTCCACCACCACAACCACCACCGCCATTACAACTACCACACCGTGGACCTATTAGTCAAAGCACAAGCCCAAGTCAAAGTACAAGCCCAAGCCATAGCCCAAGCCCAATTTCAAGCCCATCTTCACCACCACCACTCTCACATGTACCACCTTCTTACCATTCTTCAGCACCACACATGCTCTTAGCACTTGGAAATCCTTATTCAACTGTAACACCACCACACTCTGATCATAATCATCACCACCCACAAAATCATCTTCAAAGGAATCTCAATTTTGCTTCATCTGTTGTTAAGCTTGAAAACAACAACAACAACACTATCATCAACAACAACAACAACAACAACAGCAACACAAGTAGTGGGAAAAAGAGATACAGGACAAAATTCAGCAAGGAGCAGAAAGAGAAGATGCATGAATTTTCTGAGAAATTAGGATGGAGAATGCAAAAGGGTGATGATGGATTAGTTCAGAAATTCTGCAATGACATTGGTGTTTCAAGAGGGGTATTCAAAGTTTGGATGCATAACAACAAGAATAATAGTTTGAGGAAGAAATCAGAATCTGATGTTGGAATTGAAATTGCTACTCAAGGTGATAACAAGAACAATGATGGTAATGATGGATCTAACAATGTGATTCATATGAATGAAACTGGATGTGTCAATGTTCGTGTTGTTTCTTCGGTTGATGGTTTATCTTCTTAA 1191 0.4013 MDMTSRNIDADSQTPQSKQQQNNNNNNITPTTTLKSCSPFTNGTHKRHYTTTTTTPPPPQPLSSMSFSYKECLKNHAASLGGHALDGCGEFMPSSSINPNDPRSLKCAACGCHRNFHRREPQEHIITTTSTTAATTTTAATTTTNNNNTYLSCIYTTPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPSHSPSPISSPSSPPPLSHVPPSYHSSAPHMLLALGNPYSTVTPPHSDHNHHHPQNHLQRNLNFASSVVKLENNNNNTIINNNNNNNSNTSSGKKRYRTKFSKEQKEKMHEFSEKLGWRMQKGDDGLVQKFCNDIGVSRGVFKVWMHNNKNNSLRKKSESDVGIEIATQGDNKNNDGNDGSNNVIHMNETGCVNVRVVSSVDGLSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02331 396 MobiDBLite consensus disorder prediction 176 196 - -
Trre16g02331 396 Gene3D - 269 345 - -
Trre16g02331 396 MobiDBLite consensus disorder prediction 266 285 - -
Trre16g02331 396 MobiDBLite consensus disorder prediction 160 175 - -
Trre16g02331 396 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Trre16g02331 396 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Trre16g02331 396 MobiDBLite consensus disorder prediction 157 247 - -
Trre16g02331 396 NCBIfam homeobox domain, ZF-HD class 284 341 IPR006455 -
Trre16g02331 396 MobiDBLite consensus disorder prediction 1 53 - -
Trre16g02331 396 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Trre16g02331 396 SUPERFAMILY Homeodomain-like 270 342 IPR009057 -
Trre16g02331 396 FunFam Zinc-finger homeodomain protein 2 271 345 - -
Trre16g02331 396 MobiDBLite consensus disorder prediction 1 63 - -
Trre16g02331 396 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 342 - -
Trre16g02331 396 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02331 Trre-Chr16 19212308 19213498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02331 65 347 ZF-HD Transcription Factor Family AT1G69600 38.246 4.52e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre16g02331 ZF-HD_dimer 8.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02331 - - tpra:123899747 523.857