Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02328 ATGGAAGAGAGAAATGGTTGTGAGAAACTTGATGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTACTTAAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAACAACTTGATATTTATAAATTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACAGGGGAGAAAGAGTGGTATTTTTATTGTCCAAGAGACAGAAAATACAGGAACAGTGCAAGACCTAATAGGGTAACAAAAGCTGGGTTTTGGAAAGCTACAGGAACAGATAGACCTATTTATTCATCAGAGGGTTCTAGATGTATTGGATTGAAGAAATCCTTAGTTTTTTACAAAGGTAGAGCTGCTAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTTAGACTTCCTTCCCTCATTGACTCATCATCATCTCCTAAGAAATATGTAGACAAGACCATTCCTGCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACAAATGCCACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCATTACTTGAAACATCCACCTCCAATGTTCTAACAAATGATGGAAACCAAAACCAATTTTATTCATCTAACATGATGTTGACAAAAAAACCTATGATAAACCAATTTTGTACTACTAATAACCACATTAACCCAACCACTTCTAGTAGTACAACACTTTGTCCTTTAGATGTTACATCTTATAATGATAAACCAATTATTGATCCATTGATTTATAAACCCTTATACCGATTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGCCTCATTATTCTCTTCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGTATGTCATCTGAAGGAACAACCTCAAACTACATTAATGGTTTACAAGATCACTACAATAATGGGTATCCATTCATGGCTAATATTATTCCTAATGTGAATGTGCCACATGTTGATGAACAAGAGTTGGAGACAGTAAGATCCATTGGATTTCCATTTACTATGCCTTTCAATATTGGTGATGCATGGAAATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAA 1176 0.3622 MEERNGCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTKAGFWKATGTDRPIYSSEGSRCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDGNQNQFYSSNMMLTKKPMINQFCTTNNHINPTTSSSTTLCPLDVTSYNDKPIIDPLIYKPLYRLPISNDQDLNLSTASLFSSPLETSCNKTSMDVSSLLLGMSSEGTTSNYINGLQDHYNNGYPFMANIIPNVNVPHVDEQELETVRSIGFPFTMPFNIGDAWKSSLVWDTSSCTSDEPSSYSTTKCYT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02328 391 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Trre16g02328 391 FunFam NAC domain-containing protein 35 23 176 - -
Trre16g02328 391 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Trre16g02328 391 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Trre16g02328 391 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Trre16g02328 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02328 Trre-Chr16 19173593 19175718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02328 1 309 NAC Transcription Factor Family AT1G26870 57.143 1.33e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre16g02328 NAM 5.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02328 - - vra:106768003 516.538