Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02309 ATGTCTAGTAGAAGATCTCGTTCGAGACAATCTGGTGTTTCCACTGAAATCTCTGATGCTCAAATTAATGAGCTGGTCACCAAGTTACAACAACTTATTCCTGAACTTGCAAGGCGTTCCAACAAGGTTTCAGCTGCTAAAGTGTTGCAAGAGACTTGCAATTACATCAAAAATTTGCATAGAGAAGTTGATGATTTAAGTGACCGATTGTCACAACTTTTGGACACCATAGACCCTAACAGTGCTCAAGCAGCTATCATTAGGAGCTTACTTATGTGA 279 0.3978 MSSRRSRSRQSGVSTEISDAQINELVTKLQQLIPELARRSNKVSAAKVLQETCNYIKNLHREVDDLSDRLSQLLDTIDPNSAQAAIIRSLLM 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02309 92 CDD bHLH_AtPRE_like 17 76 - -
Trre16g02309 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 59 IPR011598 GO:0046983
Trre16g02309 92 PANTHER TRANSCRIPTION FACTOR PRE 1 92 IPR044293 GO:0006355|GO:0040008|GO:0046983
Trre16g02309 92 FunFam Transcription factor ILI6 7 88 - -
Trre16g02309 92 Gene3D - 4 88 IPR036638 GO:0046983
Trre16g02309 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 83 IPR036638 GO:0046983
Trre16g02309 92 Pfam Helix-loop-helix DNA-binding domain 21 59 IPR011598 GO:0046983
Trre16g02309 92 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02309 Trre-Chr16 18936943 18938481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02309 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 4.70e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g02309 HLH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02309 - - gmx:100791371 141.739