Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02305 ATGGCTTTCTTTCCGGCAAATTTTATGCTACAAACTTCTCATCAAGATGATCATCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGAGGAGGAGTATCTTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAATTAGGGGAGAAGAAAAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTAGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGACTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCTCTGAAAAATAGAGAACCAACTGAATCAATAAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTAATCAGCAAACAAGCAGAAACCTTTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAAATTGATCATATGGTCAAAGAAGAAAGTTTGAGTAACATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTTAATTGA 852 0.3709 MAFFPANFMLQTSHQDDHHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSNQQTSRNLFPSSSRPTGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02305 283 Gene3D - 70 139 - -
Trre16g02305 283 SUPERFAMILY Homeodomain-like 72 135 IPR009057 -
Trre16g02305 283 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Trre16g02305 283 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Trre16g02305 283 MobiDBLite consensus disorder prediction 178 234 - -
Trre16g02305 283 MobiDBLite consensus disorder prediction 181 234 - -
Trre16g02305 283 Coils Coil 125 173 - -
Trre16g02305 283 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Trre16g02305 283 CDD homeodomain 78 134 IPR001356 GO:0003677
Trre16g02305 283 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Trre16g02305 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 254 IPR045224 GO:0003700
Trre16g02305 283 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Trre16g02305 283 SMART HOX_1 76 137 IPR001356 GO:0003677
Trre16g02305 283 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Trre16g02305 283 FunFam Homeobox-leucine zipper protein ATHB-13 70 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02305 Trre-Chr16 18865964 18867945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02305 1 283 Homeobox Transcription Factor Family AT1G69780 64.310 1.07e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g02305 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02305 K09338 - gmx:100801479 472.626