Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02304 ATGGCTTTCTTTCCGGCAAATTTTATGCTACAAACTTCTCATCAAGATGATCATCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCTCCTCAAGATTACCATGGAGGAGTATCTTTTTTAGGAAAGAGATCTATGTCATTTTCAGGGATAGAACTTGGAGAAGAAGCTAATGTCGAAGAAGAATTATCGGACGATGGATCACAATTAGGGGAGAAGAAAAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTAGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGACTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATACTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAGATATTGGCTCTGAAAAATAGAGAACCAACTGAATCAATAAACCTTAATAAAGAAACAGAAGGATCAAGCAGTAACAGAAGTGAAAACAGTTCAGATATCAAGTTGGATATTTCAACAAGGACACAAGCTATTGATAGTCCTTTATCTAATCAGCAAACAAGCAGAAACCTTTTTCCATCTTCTTCTAGACCAACAGGAGTTCCTCATCAGCTCTTTCAAACCAATTCAAGACAAGACATTCAGTGTCAAAAAATTGATCATATGGTCAAAGAAGAAAGTTTGAGTAACATGTTTTGTGCCATTGATGAACAATCTGGATTATGGCCATGGTTGGAGCAGCAACATTTTAATTGA 849 0.3698 MAFFPANFMLQTSHQDDHHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDTIKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSDIKLDISTRTQAIDSPLSNQQTSRNLFPSSSRPTGVPHQLFQTNSRQDIQCQKIDHMVKEESLSNMFCAIDEQSGLWPWLEQQHFN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02304 282 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Trre16g02304 282 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Trre16g02304 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 253 IPR045224 GO:0003700
Trre16g02304 282 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Trre16g02304 282 SUPERFAMILY Homeodomain-like 71 134 IPR009057 -
Trre16g02304 282 SMART HOX_1 75 136 IPR001356 GO:0003677
Trre16g02304 282 MobiDBLite consensus disorder prediction 180 233 - -
Trre16g02304 282 MobiDBLite consensus disorder prediction 177 233 - -
Trre16g02304 282 Coils Coil 124 172 - -
Trre16g02304 282 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Trre16g02304 282 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Trre16g02304 282 CDD homeodomain 77 133 IPR001356 GO:0003677
Trre16g02304 282 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Trre16g02304 282 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Trre16g02304 282 Gene3D - 69 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02304 Trre-Chr16 18865964 18867945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02304 1 282 Homeobox Transcription Factor Family AT1G69780 64.527 1.73e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g02304 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02304 K09338 - gmx:100801479 477.248