Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02302 ATGATGGATGTGGAGAAGGAGAAGCAACAGGGCAATGCAGAATTGTCTAAGAAGAAGGAGCGTCGTATTGTTACTTGGACTCAAGAGGAAGATGAGATACTAAGAGAACAGATTGGAATTCACGGAACTGAAAATTGGGCGATTATTGCATCCAAATTCACGGACAAAACAACAAGACAGTGCAGAAGAAGATGGTACACATATTTGAATTCTAATTTCAAGAAAGGTGGATGGACACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAGTATTTGGGAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAATCGTTTCTCCACACTCCGCAAGAAGAAAGAAAAATCTGCAGCATTAGAAAAAGAGAACATCATTCCATACATTGATTCCAATAGCAAGAGGAATATTTCTCATCAAGGTTATAATACAAATGCAATGTCAGAATCTTCTATGCCAGTTAAAAAAATGAGGAGGGCCCATATTTCTGATGGTGCAAACAAGATCAACTTTGGAGATAGATCACATTTGCGAAATGCAGTTTCAACAAATCAGCAGCCAAGGGCACCATTTTCCGAATTAGCTAAAAAATCCAATTGTGTGAACAATCTTCCAGTCTGTCATCATATTTTCAATGACAAGTTCAACAGTTCCGGCCAAAATAACAAAAGTCAGCTCAAAAAGGATTATCCGAAGATTAGTGCATTGATTCAAATAATTGATTCAGAGAACATGGAAAATTTATGGAAACCACTTCTAGAGTTTCTGAACCGAACGGATATCATTGGAGAAAAAATTGAAGTTTTACAACTTGTAAGTCGTACGGTCAATGAGTTGAAGAGTAGTAATGAGAGAGGCCCTTCTTGCTTGAGGCAAATGGAACCAGACAAAGATTCTCCAGGAAGTTCTGAATACAGTTCAGGATCAACTCTGCTGCCTAAGTCCACCGGTACTGGTGATAATTTGGAAAGCTCACTGAATCAGGATATTGGAACTGAAATGAAAGCTACACATTTGGAAGGCTCGCTGAATCAGGATATTGGAACTGAAATGAAAGCTACACATTTGGAAAGCTCACTGAATCAGGATATTGGAACTGAAATGAAAACTGCACATTTGGAAAGCTCACTGAATCAGGATATTGGAACTGAAATGAAAGCTACACATTTGGAAAGCTCACTGAATCAGGATATTGGAACTGAAATGAAAACTGCACATTTGGAAAGCTCACTGAATCAGGATATTGGAACTGAAATGAAAGCTACACAATTTGAAGTTAAAAAAGAAGAGTGTGAAGGTGTGGAAGGGGTTCTTTCTACTGGAAAAGTGGAACAAGATATGATGCCACATGGTGAGGAACAGATAAATGCATCGTCAAGAATGGAGTGTTCCCCTATTCAAGTTACCCCTATTTTCAGATCCTTGGCCGAAGGAATTCCCAGCCCAGAATTTTCAGAAAGTGAAAAGAACTTCCTGAGGAAAACACTGGGAGTAGAATCTCCATCTATCAATACAAGTTTCAGTCCGTTCAAATTGCCACCATGCATAAGATCCCTTCACTATGATATATGA 1599 0.3896 MMDVEKEKQQGNAELSKKKERRIVTWTQEEDEILREQIGIHGTENWAIIASKFTDKTTRQCRRRWYTYLNSNFKKGGWTPEEDMLLCEAQKVFGNRWTEIAKVVSGRTDNAVKNRFSTLRKKKEKSAALEKENIIPYIDSNSKRNISHQGYNTNAMSESSMPVKKMRRAHISDGANKINFGDRSHLRNAVSTNQQPRAPFSELAKKSNCVNNLPVCHHIFNDKFNSSGQNNKSQLKKDYPKISALIQIIDSENMENLWKPLLEFLNRTDIIGEKIEVLQLVSRTVNELKSSNERGPSCLRQMEPDKDSPGSSEYSSGSTLLPKSTGTGDNLESSLNQDIGTEMKATHLEGSLNQDIGTEMKATHLESSLNQDIGTEMKTAHLESSLNQDIGTEMKATHLESSLNQDIGTEMKTAHLESSLNQDIGTEMKATQFEVKKEECEGVEGVLSTGKVEQDMMPHGEEQINASSRMECSPIQVTPIFRSLAEGIPSPEFSESEKNFLRKTLGVESPSINTSFSPFKLPPCIRSLHYDI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02302 532 CDD SANT 78 119 IPR001005 -
Trre16g02302 532 MobiDBLite consensus disorder prediction 308 335 - -
Trre16g02302 532 Coils Coil 1 21 - -
Trre16g02302 532 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Trre16g02302 532 Gene3D - 77 149 - -
Trre16g02302 532 CDD SANT 25 69 IPR001005 -
Trre16g02302 532 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Trre16g02302 532 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 69 IPR017930 -
Trre16g02302 532 MobiDBLite consensus disorder prediction 289 335 - -
Trre16g02302 532 ProSiteProfiles Myb-like domain profile. 18 69 IPR001005 -
Trre16g02302 532 Gene3D - 15 74 - -
Trre16g02302 532 Pfam Myb-like DNA-binding domain 26 86 - -
Trre16g02302 532 PANTHER MYB PROTEIN-RELATED 25 187 - -
Trre16g02302 532 SMART sant 22 71 IPR001005 -
Trre16g02302 532 SMART sant 74 122 IPR001005 -
Trre16g02302 532 SUPERFAMILY Homeodomain-like 23 116 IPR009057 -
Trre16g02302 532 FunFam Transcription factor MYB124 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02302 Trre-Chr16 18822320 18828469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02302 16 300 MYB Transcription Factor Family AT2G02820 50.482 3.16e-88 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g02302 Myb_DNA-bind_6 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02302 K09422 - gmx:100803361 471.855