Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02298 ATGTCGCATTTACAATTACAGTTACACTCACAAGCACCACCATCACTCTTCTCATCATCTCGTTCTTCTCTTTCTTCCCTCAAACTTTTCACAAACAACAAAAACTCTTTCTCTCCAACTAACTCTCTTCCTTTCAAACCTCTCACTATCAGATGCCGCCACTCTGACGTCTTTGAAACCAGAACCAACGTTTCATCACCAAACCCTAACCCTTCAGTTGGAGCTTTGCCACCAAGGGTTTATGTTGGTCATTCCATTTATAAAGGGAAGGCTGCTCTCACTATCACTCCAAGACCACCGGAATTTGCGCCTTTGGATTCAGGAGCATATAAGATAACTAGGGATGGTTACGTGCTGCTTCAGTTTGCGCCCGCTTTTGGACCCCGACAATATGATTGGAATAGTAAACAGGTGTTCTCGTTATCTGTGGCTGAAATGGGAAGTGTGATTAGCCTTGGTGGAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTATGGGAAAAAGCGATGAAGGCAAAGTCAGAAAGGTTTTGAAGGTTGAGCCTCTCCCGGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAAACAAGATTATAAACGCGGATGAAAGCATCAATATCCCTATATCAAAAGCCGAGTTGGCAGTTCTGCGCTCAATTTTCAAGTATATCATGCCGTACCTTCTAGGTTGGCATACCTTTGCAAACTCGATAAGTCCGGAGTATTATGTCGTGGCGAACAATGCTAATCCGACATATGGAGGAGACTATGAATGGAACAGATAG 789 0.4322 MSHLQLQLHSQAPPSLFSSSRSSLSSLKLFTNNKNSFSPTNSLPFKPLTIRCRHSDVFETRTNVSSPNPNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKITRDGYVLLQFAPAFGPRQYDWNSKQVFSLSVAEMGSVISLGGRESCEFFHDPFMGKSDEGKVRKVLKVEPLPDGSGFFFNLSVQNKIINADESINIPISKAELAVLRSIFKYIMPYLLGWHTFANSISPEYYVVANNANPTYGGDYEWNR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02298 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 32 262 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre16g02298 262 Pfam Whirly transcription factor 86 221 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre16g02298 262 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 262 IPR009044 GO:0003677|GO:0006355
Trre16g02298 262 Gene3D Transcriptional Coactivator Pc4; Chain A 74 250 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02298 Trre-Chr16 18783173 18786617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02298 46 262 Whirly Transcription Factor Family AT1G14410 68.349 4.24e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre16g02298 Whirly 1.6e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02298 K26559 - gmx:100789252 365.54