Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02297 ATGTTCCACACTCCTTTTCGTTTACTTAATTTTCCATGCACAAAGCTTCCACATCTAAACATTCACATCTTCCTGTCCCTTCGTTCACCAACCATCCTTTGCTCATTCAATGAAGATTCCTTTTCCATCCCTAAATCAACCCAGTTTGGTTACAGTCCTCCAGAGGATCTATTTGGGCTGGAGGTGGAACTCAAGCCAAGGAAAGCTAACTCTCATACAAGAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATAGAAAGATCTAGGTCAGACTGTCCAATATGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCCGGAGATTGTGTTATATGGGAAGAATCAATTGACGAACGACCATGGGAGAGAGCTCAATCAATATCTCCACTCAAAGTGAAGGAGGACGATGAAGTTGACAAATTAGACATAAAGCTTGATGCGAAGAAAAAATCCAAGCGTGTTTACCAGTCACCATCTCCTGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTATTTAGCAAACGAATGAAGATCATCCACCAGGATCCAATTCTTCAGGCACAGAGAGTGGATGCTATTAAGAAAGCTAAGAGAACTGTTTCAGCAAGAATGCATGCTTCCAAAACTATGAAAGAATTCTTTAGTGATCCAATAAACCGTCAAAAAAGGAGCATGGCCATGAAAGGAGTGAAATTCTACTGCCAAAACTGCGGACGTGAAGGACATAGGAGACACTATTGTCCAGAACTCAAGGATGGTTTGGTTGATCGGAGATTCACATGTAAGCTATGTGGTGAAAAAGGGCATAACCGAAGGACATGCATTAAGTCAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACTCCATCGATGCAAAATATGTCGACAATATGGCCATAACAAAATGACATGCCCTCAAGTTGTTTCGAATAAAAGAACGGACACTACATCTCAAAGAATATACAAATGTCGATTGTGCCAGAAAGAGGGACACAATATTAGAACATGTCCTAGAAAAATAGTTGGTACTGAACATTCTCAAAAGTAA 1146 0.4084 MFHTPFRLLNFPCTKLPHLNIHIFLSLRSPTILCSFNEDSFSIPKSTQFGYSPPEDLFGLEVELKPRKANSHTREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPICNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHQDPILQAQRVDAIKKAKRTVSARMHASKTMKEFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDGLVDRRFTCKLCGEKGHNRRTCIKSRISHSDGRVIKLHRCKICRQYGHNKMTCPQVVSNKRTDTTSQRIYKCRLCQKEGHNIRTCPRKIVGTEHSQK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02297 381 SMART c2hcfinal6 323 339 IPR001878 GO:0003676|GO:0008270
Trre16g02297 381 SMART c2hcfinal6 355 371 IPR001878 GO:0003676|GO:0008270
Trre16g02297 381 SMART c2hcfinal6 265 281 IPR001878 GO:0003676|GO:0008270
Trre16g02297 381 SMART c2hcfinal6 292 308 IPR001878 GO:0003676|GO:0008270
Trre16g02297 381 SUPERFAMILY Retrovirus zinc finger-like domains 263 310 IPR036875 GO:0003676|GO:0008270
Trre16g02297 381 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 54 306 - -
Trre16g02297 381 ProSiteProfiles Zinc finger CCHC-type profile. 266 281 IPR001878 GO:0003676|GO:0008270
Trre16g02297 381 Gene3D - 262 310 - -
Trre16g02297 381 SUPERFAMILY Retrovirus zinc finger-like domains 319 372 IPR036875 GO:0003676|GO:0008270
Trre16g02297 381 Gene3D - 320 377 - -
Trre16g02297 381 Pfam Zinc knuckle 354 370 IPR025829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02297 Trre-Chr16 18777197 18781801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02297 48 379 C2H2 Transcription Factor Family AT5G20220 64.118 8.86e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02297 - - cam:101493936 598.971