Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02296 ATGGAGCTTGCACTTGTGAAAAATGAATTAAGTCCAAGGAGTCATAGATTGCTCATGTTGGAAACTGATTCTGTTGTAACTACTAAATGTGTCAAAAGGCGGCGGAGAGATTCGTCTATTGCACAACAAGGTGATGTATCAGAAATACAGCAGCCATTGAGTGGACAAGCAACTACTGTGAAGAGAAGCTCAAAGTTTAGAGGTGTTAGCAGACATAGGTGGACTGGAAGGTATGAAGCTCATTTATGGGATAAAGGAACATGGAATCCAACTCAAAAGAAAAAAGGAAAGCAAGGAGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTTAAGTACTGGGGAACATCAACTTTTACAAATTTTCCTGTATCTGATTATGAGAAAGAAATTGAGATAATGATAAATATGACCAAAGAAGAGTATCTTGCTTCTTTGAGAAGAAGGAGCAGTGGTTTTTCTAGAGGTGTTTCAAAATATAGAGGCGTAGCAAGGCACCATCACAATGGAAGATGGGAGGCAAGGATTGGGAGAGTGTTCGGCAACAAGTATCTCTACCTCGGGACTTATGGTACACAAGAAGAGGCGGCTCGTGCGTACGATATCGCAGCAATTGAATACCGAGGAATAAATGCAGTAACAAACTTTGATTTGAGCACCTACATTAGATGGTTAAGGCCAGGACCAAATTCAACTACTACACAAGAACAAAAGCAAAACACAGAACTTCAAGTACCCTTTGCAGCCACTAATTCAATCCAAACAAGAACAAACATTGATGCATCGAACTCCAACATCAATCCGGAAAAGCTTTTGCAAGTTGAAACAACAAAGAAGCGAGACTTTTCCGACTCTATGATGACACCTTTATGTTCTTACAATAAACCAGCTTCACCGACAGCATTAGGACTTCTACTAAAATCGTCGGTATTTAGAGAACTAATGCAGAGAAACCTGAATTGTTCTAGTGAAGACGAAGATGAAGTTGAATTGAAATATCCTCAAGAAAGTATTGGAGGAGTTTTTGATATTGAAAACAATAGTAGTAACACTTATTTGTGCTCTTCTAATATCAACAAATTACCTAACTTGGTGTCATCAGAAGAGAGATCGTCGCCTATGTATCATGGAACTATGCAATCCGTATCAAAGTTCGAATCCCGGTTGGGAAAAGTGTCCACATTTAGTACACAACAGTGCCTCGAATAG 1224 0.3938 MELALVKNELSPRSHRLLMLETDSVVTTKCVKRRRRDSSIAQQGDVSEIQQPLSGQATTVKRSSKFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMINMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPNSTTTQEQKQNTELQVPFAATNSIQTRTNIDASNSNINPEKLLQVETTKKRDFSDSMMTPLCSYNKPASPTALGLLLKSSVFRELMQRNLNCSSEDEDEVELKYPQESIGGVFDIENNSSNTYLCSSNINKLPNLVSSEERSSPMYHGTMQSVSKFESRLGKVSTFSTQQCLE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02296 407 MobiDBLite consensus disorder prediction 34 63 - -
Trre16g02296 407 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677
Trre16g02296 407 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 Pfam AP2 domain 64 120 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 Pfam AP2 domain 163 214 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677
Trre16g02296 407 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Trre16g02296 407 MobiDBLite consensus disorder prediction 42 63 - -
Trre16g02296 407 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 43 285 - -
Trre16g02296 407 SMART rav1_2 65 134 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 SMART rav1_2 164 228 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 Gene3D AP2/ERF domain 163 224 IPR036955 GO:0003700|GO:0006355
Trre16g02296 407 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700|GO:0006355
Trre16g02296 407 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700|GO:0006355
Trre16g02296 407 CDD AP2 163 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02296 Trre-Chr16 18773814 18776331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02296 61 271 AP2-EREBP Transcription Factor Family AT5G17430 58.140 7.02e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g02296 AP2 3.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02296 - - gmx:100799621 566.229