Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02287 ATGGCGAGATCACTCAACATTTTCCTATTTTTTCTTTCTTTGGCAATCATCATTCCTACGTTGAATGCCAATGTATTAGAGAGTAAGGAATTTTGGAAGGAACAGTCAACTGAGTTTGATGCATATTGGCAGGAAAGGGCTGTAGAAGCAAAACAATTCAACCAGGCAGCTTATAACCCTGATCCTTATGCAGTCTCTGGCAACCTAACTGCTTCTATTACTGAAATCATTGCTGGAAAGAGTGCAAGAAGGAACCTTAGAGGAAACAAAGGGGGAGGACAATGTTTGGCCACAAACCCCATTGACAGATGCTGGAGGTGTGACCCAAAATGGGCTGATAACCGACAAAAACTAGCCGATTGTGTCCAAGGATTCGGCAGAAACACCCGTGGAGGTAAAGGCGGTCCAATCTACATTGTCAACGATCCTTCTGACAACGATTTATTGGACCCCAAACCTGGCACTCTCCGTCACGCAGTCACACGTAATGGACCCCTTTGGATCATATTCGCTCGTAGCATGCTCATTACACTACAACAAGAACTTATCATGAATAGTGACAAGACTATTGATGGTAGAGGAGTCGATGTTTTCATTGCCAACGGTGCCGGTATTACCATTCAATCTGTTAAGAATGTTATCATCCATGGAATTAAGATTTACAACATTCAAGTACGCGAAGGTGGTATGATTAGAGATTCCGAGACCCATTATGGTTTGAGGACTAGGAGTGATGGTGATGGTATTTCCATCTTCGGTTCTAGTAATATTTGGATCGATCATGTTTCCATGAGAAATTGTACTGATGGTTTGATTGATGCAATCATGGGATCTACTGCTATTACCATTTCCAACAGTCACTTCACAGACCACAATGAGGTGATGCTTTTTGGTGCTAGTCCCGTTCACACCGATGACAAGATCATGCAAATCACATTAGCATTCAACCATTTTGGAAAGAGATTAGTACAAAGGATGCCAAGGGCAAGATTTGGTTTTATCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAGAACCCTACAATTATCAGTGAGGGTAACAGATTCATCGGCCCAGAAAACAAATTCGTAGGTAAAGATCTTATTAATTCTAAAGAAGTAACGAAGAGAGAATACACCGAAGAAAGTGAATGGAAAAACTGGCAATGGAGATCAGTCAACGATGAATTTTTGAACGGCGCTTACTTTATTCAATCTGGACCAGAGCTAAATGATAGACCATTTTCAAGGAAAGACATGATAACAGCTAAACCAGGAAGTTATGTTGGAAGACTTACACGATTTGCCGGAAACCTACGATGCAGTGTCGGTAAACCTTGTTAG 1368 0.4145 MARSLNIFLFFLSLAIIIPTLNANVLESKEFWKEQSTEFDAYWQERAVEAKQFNQAAYNPDPYAVSGNLTASITEIIAGKSARRNLRGNKGGGQCLATNPIDRCWRCDPKWADNRQKLADCVQGFGRNTRGGKGGPIYIVNDPSDNDLLDPKPGTLRHAVTRNGPLWIIFARSMLITLQQELIMNSDKTIDGRGVDVFIANGAGITIQSVKNVIIHGIKIYNIQVREGGMIRDSETHYGLRTRSDGDGISIFGSSNIWIDHVSMRNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGASPVHTDDKIMQITLAFNHFGKRLVQRMPRARFGFIHCVNNDYTHWEMYAIGGSQNPTIISEGNRFIGPENKFVGKDLINSKEVTKREYTEESEWKNWQWRSVNDEFLNGAYFIQSGPELNDRPFSRKDMITAKPGSYVGRLTRFAGNLRCSVGKPC 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02287 455 SUPERFAMILY Pectin lyase-like 99 446 IPR011050 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 426 449 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 396 420 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Trre16g02287 455 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Trre16g02287 455 PANTHER PECTATE LYASE 18-RELATED 50 453 IPR045032 GO:0030570
Trre16g02287 455 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Trre16g02287 455 SMART amb_all 173 370 IPR002022 -
Trre16g02287 455 Gene3D - 98 448 IPR012334 -
Trre16g02287 455 Pfam Pectate lyase 182 364 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02287 Trre-Chr16 18703497 18705379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02287 7 455 Polysaccharide Lyase AT1G14420 57.511 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02287 K01728 - gmx:100798579 702.975