Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02283 ATGAGAGGAGCAAGAAGAAACGGAACAAACAGAACAAGCAGAAGGAAGAGAGAAAACAAAATCACCAACCACCGTGAAATTCCGACTCACCACAGTCAGCCACCTTCACGCGCCACTCTTTCTCTCTCCGGCCGACCACATCGCAGTCGCAGCCTCTCTCTTTCTCCGGCCGCCGCTCTATCTCTCGTTAATGAATCTGGATCTAGAATTGCCATTAGAGAAAGTTATCCTGAAAGTGTAGGTCTTGCTCACTTTAGGAAATGCGGTCTCTTAATTTTGTGTGTTAAGCATGCAAAGGTTGCTAGGTTGAAGAGGCTTTATGATTTGTGGCAAGAAAATTATGATATTGGCTTTGTTCTAATGAAGATTCAAAAAGGTAACCGAATAAGAAGATTCAAGAGATGGGAAAATTATCTTGAAAGTGTAAGTCTTGCTCACTTTAGGAGATGTAATCTCTTGATTTTGCGTGTTAAGCGTGCAAAGGTTTTTCATGGGCAACCCATGCATACTAATGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGTTACGCAGAGAAAGAATAGCAGAAAGAATAAGGGCGCTGCAAGATTTGGTTCCAAGTGTCAACAAGATTGAAAAATTATCTCTAGACAAGTAA 645 0.4264 MRGARRNGTNRTSRRKRENKITNHREIPTHHSQPPSRATLSLSGRPHRSRSLSLSPAAALSLVNESGSRIAIRESYPESVGLAHFRKCGLLILCVKHAKVARLKRLYDLWQENYDIGFVLMKIQKGNRIRRFKRWENYLESVSLAHFRRCNLLILRVKRAKVFHGQPMHTNVPAAPHPPAMRPRLRRERIAERIRALQDLVPSVNKIEKLSLDK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02283 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 214 IPR011598 GO:0046983
Trre16g02283 214 MobiDBLite consensus disorder prediction 14 31 - -
Trre16g02283 214 MobiDBLite consensus disorder prediction 32 51 - -
Trre16g02283 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 211 IPR036638 GO:0046983
Trre16g02283 214 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02283 Trre-Chr16 18628387 18634995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02283 175 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 57.895 3.62e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02283 - K05605 twl:120008096 49.6766