Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02278 ATGGGGTTAGATGGTGTGAATGGTAAGGTGATAGAGTCTTTGGAGGTGTGTAAATCAAAAGGGAGGAAGAAAAAGAAGTTACAAGATAGGGTAATGGAAGATGAAGAAAATGAAACTGGTTGTTGGCATAGCTTTAGGTTCATTGGTAGCTGCATTTCTTCAAGATCCAAGGTTGATAGTTCTGTTAGTGGTACCAGTACTAATTATGCTGAAAGTAAATCAACTCTTGATACAAGTAGAGACCAGCCATCGGTTCCGGTAGTCTCTTCGACGACGACGACTACTACCACTACTACTAGTAATGCTGAAAGCAACTCTTCTACTTCGAAAATTGAAGAAGAGCTTAAAGTTGCTTCCAGGCTGCGAAAGTTCTGTTTCAATGACCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTTGGTGAAGGTGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGGACTGCTCCGGTGAAACCTGGCACGGGACTTACCGTTGCTGTCAAAACCCTAAATCATGACGGGCTCCAGGGGCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTGGTATACGAATTTATGCCTCGGGGAAGCCTAGAAAACCACTTGTTTAGGAGATCCTTGCCACTTCCGTGGTCCATAAGGATGAAAATTGCGCTAGGAGCTGCAAAGGGACTTGCTTTTCTTCACGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAACATACTATTGGATGCAGAGTATAATGCCAAGCTCTCTGACTTTGGACTTGCAAAAGATGGGCCAGAGGGTGATAAAACCCATGTGTCTACCCGAGTTATGGGAACTTATGGTTACGCAGCACCAGAGTATGTCATGACAGGGCATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTGGTATTACTTGAGATGATAACCGGGCGAAGATCTATGGACAAAAACCGGCCAAATGGCGAACATAACCTTGTAGAATGGGCTAGACCGCATTTAGGTGAAAGAAGAAGGTTCTACAGGTTGATAGATCCTCGATTGGAAGGCCACTTCTCGATAAAAGGAGCTCAAAAAGCTGCCCATTTGGCTGCTCACTGCCTTAGCCGAGATCCAAAAGCAAGACCACTAATGAGTGAAGTCGTAGAAGCTTTGAAGCCTCTCCCAAACCTAAAGGATATGGCTAGTTCATCATACTATTTCCAGACGATGCAAGCTGACCGATTTAGTGCAAGTCCAAATACTCGAAATGGTAGAACACAAGGAGGATTCGCCCGAAATGGACAACAACAAAGGAGCCTTTCGATATCACATGGTACTCATGCTTCTCCATTTCGCCATCAGTATCCTCAACATTCACCAAAGCCAACGGGAAAAGCGCAGAGTTGA 1482 0.4352 MGLDGVNGKVIESLEVCKSKGRKKKKLQDRVMEDEENETGCWHSFRFIGSCISSRSKVDSSVSGTSTNYAESKSTLDTSRDQPSVPVVSSTTTTTTTTTSNAESNSSTSKIEEELKVASRLRKFCFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAHLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRTQGGFARNGQQQRSLSISHGTHASPFRHQYPQHSPKPTGKAQS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02278 493 ProSitePatterns Protein kinases ATP-binding region signature. 142 174 IPR017441 GO:0005524
Trre16g02278 493 PANTHER OS01G0588500 PROTEIN-RELATED 99 419 - -
Trre16g02278 493 CDD STKc_IRAK 142 419 - -
Trre16g02278 493 FunFam Probable serine/threonine-protein kinase PBL8 222 437 - -
Trre16g02278 493 ProSiteProfiles Protein kinase domain profile. 136 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02278 493 MobiDBLite consensus disorder prediction 56 108 - -
Trre16g02278 493 Gene3D Transferase(Phosphotransferase) domain 1 222 438 - -
Trre16g02278 493 Gene3D Phosphorylase Kinase; domain 1 110 221 - -
Trre16g02278 493 FunFam Serine/threonine-protein kinase BIK1 103 221 - -
Trre16g02278 493 MobiDBLite consensus disorder prediction 441 478 - -
Trre16g02278 493 MobiDBLite consensus disorder prediction 56 111 - -
Trre16g02278 493 Pfam Protein tyrosine and serine/threonine kinase 140 416 IPR001245 GO:0004672|GO:0006468
Trre16g02278 493 MobiDBLite consensus disorder prediction 441 493 - -
Trre16g02278 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Trre16g02278 493 SUPERFAMILY Protein kinase-like (PK-like) 115 416 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02278 Trre-Chr16 18604717 18607695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02278 105 416 Glycoside Hydrolase AT3G07070 56.467 6.54e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre16g02278 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02278 - - gmx:100807510 872.848