Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02265 ATGTCATCACTGATATGGTTGTCTCTTGAAAACAATAATTTATCAGGCATTATTACATCAAATACAGGATACAATCTTCCTAGATTGCATTATTTACACTTGAATAATAACAATTTTGTTGGAAATATTCCAAATAGTATATTCAACTCTTCTAATCTCATTCAATTTCAATTGGATTCCAATGCATTTAGTGGAACTCTATCAAATATTGCTTTTGGAAATTTAAGGCTCTTGGAAACAATTTTTATATATGACAACCATTTGACAATAGATGATTCTCTTCAATTTTTTACTTCCTTGTCCAATTGTAGATATTTGAAATATCTAGATCTATCAGGGAATCAAATACAACCCAATCTTCCTAAGTCAATCGGAAACATATCTTCACAATTCTTTACAGCAGATTCATGTGGAATTGTTGGTAATATTCCCTTAGAAGTTGGAAACATGAGTGAATTGTTGCTTTTGTCTCTATATGATAATGATATAAATGGACCAATACCTGGTACATTCAAAAGGTTACACAAACTTCAGGCACTGAATCTTGTTAACAATAGTCTACAGGGGTCATTCATTGAGGAGATTTGTCAAATTAAGAGATTGGAACGGTTGCATCTTGAATATAATAAGCTTTCTGGAGCTATACCAATATGTTTGGGAAATTTGACTTCTCTTCAAAATTTATATGTAGGATATAACCGTTTCAACTCTATGATACCTTCTTCTCTTTGGAGTATCACAGATATCATACGGGTAGATTTGTCCTATAATAGTTTCATTGGTAATATTCCACCCGAGATTGGGAATTTGAGGGCAATTGTAGTATTAGATCTATCTGAAAATCATATTTCAGGCAACATTCCTGCAACCATTGGTTCCTTAAAAACTTTGCAGAAACTCTCCTTAGCACATAACAAACTAATGGGAACAATTCCCACATCACTTGGTGAAATTGTAAGCTTGGTGTTATTGGACTTATCACAAAATATGCTAACGGGTGTTATTCCAAAATCCCTAGAATCACTTGTGCAACTCCAAACCATCAACTTTTCATATAACATATTACAAGGAGAGATTCCTGATGGTGGAGTTTTCAAAAACTTCACGGCTCAATCATTTATGCATAATGAAGCACTCTGTGGTAATCCTCGCCTACAAGTACCTTTGTGCGATAATCAGGTTAAGAAAAGTTCAACAGAAAAGAAGTTGTTACTCAAATGCATAATTCCCATAGTTGTGTCAACTATTTTGATTGTTGCAAGCATCATAATTTTGATAGTTAAGAAAAGGAAAAAGGTTGAAAATACTCTTGAAAGGGGTTTGTCAACTTTAGGTGCGCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATCAGGGGAAGCTTCCTGATGGTGAGATGATTGCAGTTAAAGTAATTGATTTGCAATCAGATGTAAAATCAAAAAGCTTTGATACTGAATGCAATGCAATGAAAAATCTTCGACATCGGAATTTGGTTAAGATTATCAGTGGTTGTTCGAATCTCGATTTCAAAGCACTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTCACATAACTATTGTTTAAACTTCTTACAAAGATTAAATATAATGATAGATGTTGCATCCGCATTGGAATATCTCCATCACGGTTCTTCAGTACCTGTGGTTCATTGTGATTTAAAGCCAACTAATGTGTTATTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAGTCTAAAACGCACACTCAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTTTGGTATTATGCTAATGGAAATCTTCACAAGAAGAAAGCCAACAGATGACATATTTGGTGCAGAACTAAGTTTGAAAACATGGATCAGTCAATCATTGCTGAATTCAATTATGGAGGTCCTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGACATATTGACTTACATGTCAACTATTTTTGGTTTAGCCTTGAATTGTTGCGAAGATTCACCTGAAGCAAGAATTAATATGGTAGATGTTACTGCGTCGCTAATCAAAATCAAGACTTTGGTTGTTGGCGCAAATAGGGCCTAG 2244 0.348 MSSLIWLSLENNNLSGIITSNTGYNLPRLHYLHLNNNNFVGNIPNSIFNSSNLIQFQLDSNAFSGTLSNIAFGNLRLLETIFIYDNHLTIDDSLQFFTSLSNCRYLKYLDLSGNQIQPNLPKSIGNISSQFFTADSCGIVGNIPLEVGNMSELLLLSLYDNDINGPIPGTFKRLHKLQALNLVNNSLQGSFIEEICQIKRLERLHLEYNKLSGAIPICLGNLTSLQNLYVGYNRFNSMIPSSLWSITDIIRVDLSYNSFIGNIPPEIGNLRAIVVLDLSENHISGNIPATIGSLKTLQKLSLAHNKLMGTIPTSLGEIVSLVLLDLSQNMLTGVIPKSLESLVQLQTINFSYNILQGEIPDGGVFKNFTAQSFMHNEALCGNPRLQVPLCDNQVKKSSTEKKLLLKCIIPIVVSTILIVASIIILIVKKRKKVENTLERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYQGKLPDGEMIAVKVIDLQSDVKSKSFDTECNAMKNLRHRNLVKIISGCSNLDFKALVMEFMSNGSVDKWLYSHNYCLNFLQRLNIMIDVASALEYLHHGSSVPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYLAPEYGSKGIVSVKGDVYSFGIMLMEIFTRRKPTDDIFGAELSLKTWISQSLLNSIMEVLDSNLVQQYGEQIDDILTYMSTIFGLALNCCEDSPEARINMVDVTASLIKIKTLVVGANRA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02265 747 Gene3D Phosphorylase Kinase; domain 1 445 537 - -
Trre16g02265 747 SUPERFAMILY L domain-like 2 189 - -
Trre16g02265 747 ProSiteProfiles Protein kinase domain profile. 462 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02265 747 ProSitePatterns Protein kinases ATP-binding region signature. 468 490 IPR017441 GO:0005524
Trre16g02265 747 Gene3D Ribonuclease Inhibitor 1 130 IPR032675 -
Trre16g02265 747 Gene3D Ribonuclease Inhibitor 131 392 IPR032675 -
Trre16g02265 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 581 593 IPR008271 GO:0004672|GO:0006468
Trre16g02265 747 FunFam Serine-threonine protein kinase plant-type 443 537 - -
Trre16g02265 747 Gene3D Transferase(Phosphotransferase) domain 1 538 742 - -
Trre16g02265 747 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 538 746 - -
Trre16g02265 747 SUPERFAMILY L domain-like 135 383 - -
Trre16g02265 747 Pfam Protein kinase domain 463 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02265 747 PANTHER OS04G0122200 PROTEIN 1 738 - -
Trre16g02265 747 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 99 394 - -
Trre16g02265 747 Pfam Leucine rich repeat 252 307 IPR001611 GO:0005515
Trre16g02265 747 SMART serkin_6 462 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02265 747 SUPERFAMILY Protein kinase-like (PK-like) 443 734 IPR011009 -
Trre16g02265 747 SMART LRR_typ_2 1 25 IPR003591 -
Trre16g02265 747 SMART LRR_typ_2 270 294 IPR003591 -
Trre16g02265 747 SMART LRR_typ_2 318 341 IPR003591 -
Trre16g02265 747 SMART LRR_typ_2 26 50 IPR003591 -
Trre16g02265 747 SMART LRR_typ_2 222 246 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02265 Trre-Chr16 18498964 18501617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02265 1 747 Receptor kinase-like Gene Family AT3G47570 37.789 7.85e-164 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre16g02265 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02265 - K13420 mtr:25481440 1073.15