Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02263 ATGTCATCACTAACAATGTTGGAAGTTGAACTAAACCACCTCTCAGGCATAATTCAATCAAATATGGGATATAGTCTTCCTAACTTGCAATATCTACACTTGAACAACAACAATTTCCTTGGTAATATTCCAATTACAATATTCAATTCTTCTAAGCTCATTCAATTGGAATTGGAGAGCAATGCATTCAATGGAACTTTGCCCAATAATGCTTTTGGAAATTTAAGGTTCCTCGAAGCAATTTTCATAGCTAACAACAATTTGACAATAGATGATTCTCTTCAATTTTTTACCTCCTTGTCAAATTGTAGATATTTAAAATATCTAGAACTCGCAGGGAATCATCATATAGTTTCCAGTCTTCCTAAGTCTATCGGAAACATAACTTGCCAATATTTTGATGCAAGTTCATGTGGAATTGTTGGTAATATTCCCCTAGAAGTTGGAAACATGAGTGAATTGTTACTTTTTGCTCTAGCTGATAATAATTTAAATGGACCAATACCTGGTACATTCAAAGGGTTACAAAAACTTCAGCGATTGCACCTTCACTACAATAGTCTACAAGGATCATTTATTGAGGAGCTTTGTGAAACTAAGAGATTGGAATGGTTGAATCTTGGAAATAATAAGATTTCTGGAGTTTTACCAAAATGTTTGGAAAATTTGACTACTCTTCAAAATTTATACTTAGGAAATAACCGTTTCAACTCTAGAATACCTTCTTCTCTTTGGAGTCTCACAGATATCTTACGGGTAGATTTGTCCTCTAATAGTTTAATTGGTAATATTCCACTTGAGATTGGAAATTTGAGAGCAATTATATCATTAAATCTATCAAGAAATCAAATTTCAAGCAACATTCCTCCCACAATCAGTTTCTTAAAAACTTTGCAGAATCTATCCTTAGCACATAACAAACTCAATGGATCAATTCCCGCATCACTTGGTGACATGTTAAGTTTGATCTCCTTGGACTTATCCCAAAATATGTTAATTGGTGTTATTCCTAAATCCTTGGAAAATCTTACCCAACTCCAAAACATCAACTTCTCATATAATAGACTACAAGGAGAGATTCCTGATGGTGGAATTTTCAAAAATTTCACGGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTACAAGTACCTTTTTGCGATAATCAGGTTAATAAAAGTTCAACAGAAAAGAAGTTGTTACTCAAATGCATAATTCCCACAGTTGTGTCAACTATTTTGATTGTGGCAAGCATCATAATTTTGATAGTTAAGAAAAGGAAAAAGGTTGAAAATACTCTTGAAAGGGGTTTGTCAACTTTAGGTGCTGCAAGAAGAATATCCTATTATAAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATGAGGGGAAGCTTCCTGATGGTGAGATGATAGCCGTTAAAGTAATCGATTTGCAATCAGATGTAAAATCAAAAAGCTTTGATACCGAATGCAATGCAATGAAAAATCTTCGACATCGGAATTTGATTAAGATTATCAGTGGTTGTTCGAATCTCGATTTCAAAGCACTGGTGATGGAGTTCATGCCAAATGGAAGTGTGGACAAATGGTTATATTCACATAACTATTGTTTAAATTTCTTACAAAGGTTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATTCCAGTGGTTCATTGTGATCTAAAGCCAACTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGCATTGCCAAGCTCATGGATGAAGGACAATCTAAAACACATACAGAGACATTAGCTACTATTGGATACCTTGCACCAGAGTATGGAACTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAGCAGATGATATGTTTGTTGCAGAACTAAGTTTGAAAACATGGATCATTGGATCATTGCCTAATTCTATTCTTGAGGTCTTGGATTCTAATTTAGTCCAACAATATGGGGAGCAAATTGATGACATAGTTACATACATGTCAACTATTTTTGGTTTAGCTCTTAATTGTTGTGAATATTCACCTGAAGCAAGAATTAATATGGCAGATGTTACTGCTTCCCTCGTCAAACTCAAGAATTTGGCTCTTAGCAGAAACATGGTCTAG 2247 0.3458 MSSLTMLEVELNHLSGIIQSNMGYSLPNLQYLHLNNNNFLGNIPITIFNSSKLIQLELESNAFNGTLPNNAFGNLRFLEAIFIANNNLTIDDSLQFFTSLSNCRYLKYLELAGNHHIVSSLPKSIGNITCQYFDASSCGIVGNIPLEVGNMSELLLFALADNNLNGPIPGTFKGLQKLQRLHLHYNSLQGSFIEELCETKRLEWLNLGNNKISGVLPKCLENLTTLQNLYLGNNRFNSRIPSSLWSLTDILRVDLSSNSLIGNIPLEIGNLRAIISLNLSRNQISSNIPPTISFLKTLQNLSLAHNKLNGSIPASLGDMLSLISLDLSQNMLIGVIPKSLENLTQLQNINFSYNRLQGEIPDGGIFKNFTAQSFMHNEALCGNPRLQVPFCDNQVNKSSTEKKLLLKCIIPTVVSTILIVASIIILIVKKRKKVENTLERGLSTLGAARRISYYKLVQATNGFNESNLLGKGGFGSVYEGKLPDGEMIAVKVIDLQSDVKSKSFDTECNAMKNLRHRNLIKIISGCSNLDFKALVMEFMPNGSVDKWLYSHNYCLNFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTETLATIGYLAPEYGTSGIVSVKGDVYSYGIMLMEIFTRKKPADDMFVAELSLKTWIIGSLPNSILEVLDSNLVQQYGEQIDDIVTYMSTIFGLALNCCEYSPEARINMADVTASLVKLKNLALSRNMV 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02263 748 Gene3D Ribonuclease Inhibitor 1 392 IPR032675 -
Trre16g02263 748 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 98 395 - -
Trre16g02263 748 Gene3D Transferase(Phosphotransferase) domain 1 539 746 - -
Trre16g02263 748 Gene3D Phosphorylase Kinase; domain 1 445 538 - -
Trre16g02263 748 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 539 747 - -
Trre16g02263 748 SUPERFAMILY Protein kinase-like (PK-like) 445 735 IPR011009 -
Trre16g02263 748 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Trre16g02263 748 SUPERFAMILY RNI-like 9 362 - -
Trre16g02263 748 SMART serkin_6 463 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02263 748 Pfam Leucine rich repeat 297 356 IPR001611 GO:0005515
Trre16g02263 748 Pfam Leucine rich repeat 200 236 IPR001611 GO:0005515
Trre16g02263 748 Pfam Protein kinase domain 464 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02263 748 ProSitePatterns Protein kinases ATP-binding region signature. 469 491 IPR017441 GO:0005524
Trre16g02263 748 SMART LRR_typ_2 271 295 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 201 222 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 343 368 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 175 200 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 319 342 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 223 247 IPR003591 -
Trre16g02263 748 SMART LRR_typ_2 26 50 IPR003591 -
Trre16g02263 748 PANTHER OS04G0122200 PROTEIN 1 739 - -
Trre16g02263 748 ProSiteProfiles Protein kinase domain profile. 463 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02263 748 FunFam Serine-threonine protein kinase plant-type 443 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02263 Trre-Chr16 18463239 18465657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02263 1 739 Receptor kinase-like Gene Family AT3G47570 37.403 6.82e-160 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre16g02263 Pkinase 4.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02263 - K13420 mtr:25481440 1058.51