Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02261 ATGCAATATCGTAGAAGAAGCTATGGAACGAAAACACACAGAAGTTTTGGAACGAAAACTCCACAGTCTCTGCCGCCGTTAAAACACAACTTGCTCTCTTCCGCCGACGAATCATCTCCGCTTCTCTCTTTCTCCTCCACCGAAGAATCTTTCCGGCGCTTCTCAGGTGCAACACTTTTTACACATGCACCACCAAGGAAGACAAGAAGACGCTTAGCTCGTCAGAAGACGGCATTTAAGATTCTCCCCAGGCCTACTGCTGGACCGCTTAGGCCAATTGTTCATATGGAGAGACTCAGAAATACAGCATGA 312 0.4744 MQYRRRSYGTKTHRSFGTKTPQSLPPLKHNLLSSADESSPLLSFSSTEESFRRFSGATLFTHAPPRKTRRRLARQKTAFKILPRPTAGPLRPIVHMERLRNTA 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02261 103 Pfam Ribosomal protein L13e 62 100 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre16g02261 103 MobiDBLite consensus disorder prediction 13 32 - -
Trre16g02261 103 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02261 Trre-Chr16 18439468 18441772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02261 60 100 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 63.415 3.77e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02261 K02873 - bvg:104893113 61.6178